Miyakogusa Predicted Gene

Lj0g3v0318139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318139.1 tr|G7KN01|G7KN01_MEDTR STAM-binding protein
OS=Medicago truncatula GN=MTR_6g083940 PE=4
SV=1,82.5,0.0000000003,seg,NULL,CUFF.21549.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3 ...    55   2e-08
AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...    49   2e-06
AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...    49   2e-06

>AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3
          domain of STAM 1 | chr1:18043925-18047427 REVERSE
          LENGTH=507
          Length = 507

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 5  SSSGTINIAASAQKLDVDNRIALCFYFRIADNILRQA 41
          SS  TI+IA SA+++ VDNRI+L FYFRIADNIL+QA
Sbjct: 3  SSFETIDIATSARRIGVDNRISLKFYFRIADNILKQA 39


>AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 |
           chr1:27805173-27814433 REVERSE LENGTH=1370
          Length = 1370

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 28/34 (82%)

Query: 128 YTELEIAVSEIGIVGLNAENLGIGGVWVDSDPIL 161
           YTELE++V +IGIVGL+AENLGI  V VD +P +
Sbjct: 44  YTELEVSVPDIGIVGLHAENLGIESVLVDGEPTV 77


>AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 |
           chr1:27805173-27814433 REVERSE LENGTH=1390
          Length = 1390

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 28/34 (82%)

Query: 128 YTELEIAVSEIGIVGLNAENLGIGGVWVDSDPIL 161
           YTELE++V +IGIVGL+AENLGI  V VD +P +
Sbjct: 44  YTELEVSVPDIGIVGLHAENLGIESVLVDGEPTV 77