Miyakogusa Predicted Gene

Lj0g3v0317579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317579.1 CUFF.21481.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25970.1 | Symbols:  | KH domain-containing protein | chr2:11...   118   1e-27
AT4G10070.1 | Symbols:  | KH domain-containing protein | chr4:62...    79   2e-15
AT1G33680.1 | Symbols:  | KH domain-containing protein | chr1:12...    76   8e-15

>AT2G25970.1 | Symbols:  | KH domain-containing protein |
           chr2:11071844-11075604 REVERSE LENGTH=632
          Length = 632

 Score =  118 bits (296), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/132 (52%), Positives = 82/132 (62%), Gaps = 22/132 (16%)

Query: 2   DAAADPNSPNRLVELMGTPEAIASAEKLITEILVR---------------------QADE 40
           D  ADPN   R V+L GTP+ I+ AE+LIT++L                        AD+
Sbjct: 172 DMDADPNCATRTVDLTGTPDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQ 231

Query: 41  FSMKIPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQI 100
           F MKIPN+ VG IIGK G+TI SMQA +GARIQVIPLHL PGD  T ERTL+I G   QI
Sbjct: 232 FVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGD-PTPERTLQIDGITEQI 290

Query: 101 ESAKHLVNLIMT 112
           E AK LVN I++
Sbjct: 291 EHAKQLVNEIIS 302



 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 37  QADEFSMKIPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGA 96
           Q     + IPN  VG IIGK G+TI  +Q  SGA+IQV        D +   RT+ + G 
Sbjct: 132 QGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVT--RDMDADPNCATRTVDLTGT 189

Query: 97  PHQIESAKHLVNLIM 111
           P QI  A+ L+  ++
Sbjct: 190 PDQISKAEQLITDVL 204


>AT4G10070.1 | Symbols:  | KH domain-containing protein |
           chr4:6295608-6299759 REVERSE LENGTH=725
          Length = 725

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 23/131 (17%)

Query: 2   DAAADPNSPNRLVELMGTPEAIASAEKLITEILVRQ---------------------ADE 40
           D+ ADP+S  R VE++G+   I SAEKLI+ ++                         ++
Sbjct: 214 DSEADPSSALRPVEIIGSVACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQ 273

Query: 41  FSMKIPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQI 100
             +K+PN  VG IIG+ G+TI +MQ  SGAR Q+IP H + GD   KERT++I G   QI
Sbjct: 274 IEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQH-AEGD-GLKERTVRISGDKMQI 331

Query: 101 ESAKHLVNLIM 111
           + A  ++  +M
Sbjct: 332 DIATDMIKDVM 342



 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 26  AEKLITEILVRQADEFSMKIPNHTVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTS 85
            EK   E+   Q+    + +P+  VG +IGK G+TI  +Q  SGA+IQ+  L  S  D S
Sbjct: 163 GEKSQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQI--LRDSEADPS 220

Query: 86  TKERTLKIVGAPHQIESAKHLVNLIM 111
           +  R ++I+G+   IESA+ L++ ++
Sbjct: 221 SALRPVEIIGSVACIESAEKLISAVI 246


>AT1G33680.1 | Symbols:  | KH domain-containing protein |
           chr1:12204056-12208282 FORWARD LENGTH=763
          Length = 763

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 16/123 (13%)

Query: 2   DAAADPNSPNRLVELMGTPEAIASAEKLITEILVRQ-------------ADEFSMKIPNH 48
           DA ADP+S  R VE++GT   I  AEKLI  ++                 ++  +K+P+ 
Sbjct: 270 DAEADPSSALRPVEIIGTVSCIEKAEKLINAVIAEVEAGGVPALAARGVPEQMEIKVPSD 329

Query: 49  TVGFIIGKRGDTINSMQAWSGARIQVIPLHLSPGDTSTKERTLKIVGAPHQIESAKHLVN 108
            VG IIG+ G+TI +MQ  S ARIQ+IP   + GD S KERT++I G   QI+ A  L+ 
Sbjct: 330 KVGVIIGRGGETIKNMQTKSRARIQLIP--QNEGDAS-KERTVRISGDKRQIDIATALIK 386

Query: 109 LIM 111
            +M
Sbjct: 387 DVM 389