Miyakogusa Predicted Gene

Lj0g3v0317529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317529.1 tr|Q109L1|Q109L1_ORYSJ PsbP family protein,
expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os10g32,39.78,3e-19,PsbP,Photosystem II PsbP, oxygen evolving
complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.21478.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...   138   7e-34
AT2G39470.2 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...   138   8e-34
AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:2051403...    88   1e-18
AT2G39470.3 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...    48   1e-06

>AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477653 FORWARD LENGTH=238
          Length = 238

 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 82/96 (85%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
           +GP+EEVV +LVKHK++ P Q++TIYDM+E+  DGK+YYTFEY L +P +++ SF TVA+
Sbjct: 143 VGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAV 202

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GN RYYTLIVGANERRW++V+ QL+VVADS ++L I
Sbjct: 203 GNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238


>AT2G39470.2 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477653 FORWARD LENGTH=230
          Length = 230

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 82/96 (85%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
           +GP+EEVV +LVKHK++ P Q++TIYDM+E+  DGK+YYTFEY L +P +++ SF TVA+
Sbjct: 135 VGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAV 194

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GN RYYTLIVGANERRW++V+ QL+VVADS ++L I
Sbjct: 195 GNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 230


>AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 |
           chr3:20514031-20515275 REVERSE LENGTH=230
          Length = 230

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 61/93 (65%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
            GP +++   L+K   + P Q +T+ D  E ++DGK YY FE+ + + N++  +  T+ +
Sbjct: 136 FGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITV 195

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRL 93
            NG +YTL  GANERRW++++++L  V DSF++
Sbjct: 196 FNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228


>AT2G39470.3 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477402 FORWARD LENGTH=174
          Length = 174

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 27/30 (90%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQE 30
           +GP+EEVV +LVKHK++ P Q++TIYDM+E
Sbjct: 135 VGPMEEVVYDLVKHKFAAPNQVATIYDMKE 164