Miyakogusa Predicted Gene

Lj0g3v0317519.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317519.1 tr|B5YNR2|B5YNR2_THAPS Predicted protein
(Fragment) OS=Thalassiosira pseudonana GN=THAPS_35685 PE=4
,40.16,2e-19,CS,CS-like domain; no description,NULL; coiled-coil,NULL;
CS,CS domain; HSP20-like chaperones,HSP20-,CUFF.21477.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58740.1 | Symbols:  | HSP20-like chaperones superfamily prot...   241   1e-64
AT4G27890.1 | Symbols:  | HSP20-like chaperones superfamily prot...    60   4e-10
AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily ...    59   1e-09

>AT5G58740.1 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr5:23725936-23727528 REVERSE LENGTH=158
          Length = 158

 Score =  241 bits (615), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 121/130 (93%)

Query: 1   MAEKLAPEKRHIFLHNGQKVFEWDQTLDEINIYINLPPNVHSKQFYYKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTL+E+N+YI LPPNVH K F+ KIQSKHIE+GIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHDFTSPVKTDSSFWTLEDDIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQK 120
           NPPYLNHD ++PVKTD SFWTLEDDIMH+TLQKR+KGQTWASPILGQGQLD Y TD+EQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEE 130
           RLMLQRFQEE
Sbjct: 121 RLMLQRFQEE 130


>AT4G27890.1 | Symbols:  | HSP20-like chaperones superfamily protein
           | chr4:13886033-13887220 FORWARD LENGTH=293
          Length = 293

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYYKIQSKHIELGIKGNPPYLNHDFTSPVKTDSSFW 80
           + W Q L E+ I I +P    S+    +I+   +++G+KG    ++ +F + VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDDIM-HVTLQKRDKGQTWASPILGQGQLDAYTTDIEQKRL 122
            +ED  M  V L K+D+ + W   + G+ ++D    + E  +L
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKL 238


>AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily
           protein | chr5:21661588-21663383 FORWARD LENGTH=304
          Length = 304

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYYKIQSKHIELGIKGNPPYLNHDFTSPVKTDSSFW 80
           + W Q L E+ + I +P    ++    +I+   +++G+KG  P ++ +    VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLED-DIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQKRL 122
            +ED  ++ + L K D+ + W   + G+ ++D    + E  +L
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKL 249