Miyakogusa Predicted Gene

Lj0g3v0316659.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316659.3 Non Chatacterized Hit- tr|D7SS16|D7SS16_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,72.27,0,RNA
PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN,NULL; Pseudouridine
synthase,Pseudouridine synthase, cat,CUFF.21412.3
         (383 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78910.1 | Symbols:  | Pseudouridine synthase family protein ...   507   e-144
AT3G19440.1 | Symbols:  | Pseudouridine synthase family protein ...   200   2e-51
AT1G76050.2 | Symbols:  | Pseudouridine synthase family protein ...    55   9e-08
AT3G52260.2 | Symbols:  | Pseudouridine synthase family protein ...    52   1e-06

>AT1G78910.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:29665269-29667557 FORWARD LENGTH=478
          Length = 478

 Score =  507 bits (1306), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/378 (64%), Positives = 297/378 (78%), Gaps = 11/378 (2%)

Query: 13  WLSSAVRHYSRIQPPRPVCVEPVIRVSNNIARLDVPKEGPKPRQILSLPPFPGHPLPGAS 72
           +L+  +R YSR+ PP       VIRV+NN+A L  PK+GP PRQ++SLPPFPGHPLPG +
Sbjct: 12  YLTVLIRRYSRVAPPP----SSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKN 67

Query: 73  GQQRD-------HVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMK 125
                       HVTA++W+KYYF+  +   I++HF KGLVQME     D+  +K++   
Sbjct: 68  AGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAI 127

Query: 126 PMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSA 185
           PMRK++ N+VM+ G ++ +PVS+AE RISKRYD IPSGTLYPNADEI YLQRLV +KDSA
Sbjct: 128 PMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSA 187

Query: 186 IIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDS 245
           IIVLNKPPKLPVKGN+P+HNSMD       S+  DEGP+LVHRLD+E+SG+L+ GRTK+S
Sbjct: 188 IIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKES 247

Query: 246 VSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGK 305
           + +L  +FS+     SSCKAWN ACEA YQ+YWALVIG+P EKEG+I APLSKVLL+DGK
Sbjct: 248 IDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGK 307

Query: 306 TERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIV 365
           T+RV+LA  S  E  Q+A+TEY+VLGPKINGCSWVELRP+TSRKHQLRVHCAEALGTPIV
Sbjct: 308 TDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIV 367

Query: 366 GDYKYGWFVHNRWKQMPR 383
           GDYKYGWFVH RWKQMP+
Sbjct: 368 GDYKYGWFVHKRWKQMPQ 385


>AT3G19440.1 | Symbols:  | Pseudouridine synthase family protein |
           chr3:6740778-6743132 FORWARD LENGTH=477
          Length = 477

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 174/305 (57%), Gaps = 8/305 (2%)

Query: 72  SGQQRDHVTAVNWIKYYFKGTWGSVIESHFRKGLVQMEDLIAADSFTQKDERMKP-MRKM 130
           S       TA+ WI         ++++  FR   V+ E  ++ D     DE  +  ++++
Sbjct: 83  SSTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVDG----DELQRSQLKRV 138

Query: 131 RPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLN 190
              + +  G R+++P+S+     + +       +   + +E K++  LV+YKD AIIVLN
Sbjct: 139 AAKESLNVGDRIYLPLSVDND--TPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLN 196

Query: 191 KPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQ 250
           KP  L V+G   +  S+D        +D  E P+LVHRLD++ SG+L+  RT+ + + L 
Sbjct: 197 KPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLH 256

Query: 251 WLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVM 310
            +F    +  S+     +  ++  ++Y ALVIG P  + G I APL KV+++DGK+ER+ 
Sbjct: 257 SIFREKTTGASAYGVKKNV-KSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERIT 315

Query: 311 LAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKY 370
           +  +  +   Q A+TEYRV+    +G +W+ELRPLT RKHQLRVHCAE LGTPIVGDYKY
Sbjct: 316 VNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKY 375

Query: 371 GWFVH 375
           GW  H
Sbjct: 376 GWQAH 380


>AT1G76050.2 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28540858-28542826 FORWARD LENGTH=430
          Length = 430

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 23/159 (14%)

Query: 216 SYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQ 275
           SY     P +VHRLDK ++G+L+  + + S +HL   F                     +
Sbjct: 220 SYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFK---------------LHTIER 264

Query: 276 RYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEP--RQEAVTEYRVLGPK 333
            Y +L  G P+  +G I  P+ +    D      M A    +     + A + Y+V+   
Sbjct: 265 VYVSLTTGVPSPPQGRIEIPIGR----DSSNRIRMAAIPGGVRGGRARHAASRYKVIETF 320

Query: 334 INGCS-WVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
             G S  VE R  T R HQ+R H A+ +G P++GD  YG
Sbjct: 321 AGGGSALVEWRLETGRTHQIRAH-AKYMGVPLLGDEVYG 358


>AT3G52260.2 | Symbols:  | Pseudouridine synthase family protein |
           chr3:19383452-19386440 REVERSE LENGTH=369
          Length = 369

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 19/204 (9%)

Query: 179 VIYKDSAIIVLNKPPKLPV-KGNL----PVHNSMDXXXXXXXSYDYDEG---PKLVHRLD 230
           V+Y+D  +I LNKP  L V  G L     V   +        SY        P  VHRL 
Sbjct: 99  VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLG 158

Query: 231 KESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQR---YWALVIGTPNE 287
           + +SGILL  +TK + + L   F+   S   S    +  C    +    Y AL  G   E
Sbjct: 159 RGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGN-LDQECGTGRKLSKIYRALADGIVEE 217

Query: 288 KEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLG-PKINGCSWVELRPLT 346
            E +I  P+  V+   G  + + +A        + A ++  VL   +   CS V++   +
Sbjct: 218 DEVVIKQPIG-VVRYPGVAQGLYVASPEG----KPAFSKVFVLERDREKNCSLVKVEIQS 272

Query: 347 SRKHQLRVHCAEALGTPIVGDYKY 370
            R HQ+R+H A  +G P+VGD  Y
Sbjct: 273 GRPHQIRIHLA-YMGHPLVGDPLY 295