Miyakogusa Predicted Gene

Lj0g3v0316659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316659.1 tr|D3BJX8|D3BJX8_POLPA Probable ribosomal large
subunit pseudouridine synthase C protein
OS=Polyspho,35.57,1e-18,PseudoU_synth_2,Pseudouridine synthase,
RsuA/RluB/C/D/E/F; RNA PSEUDOURIDYLATE SYNTHASE FAMILY
PROTE,CUFF.21412.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78910.1 | Symbols:  | Pseudouridine synthase family protein ...   364   e-101
AT3G19440.1 | Symbols:  | Pseudouridine synthase family protein ...   171   6e-43

>AT1G78910.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:29665269-29667557 FORWARD LENGTH=478
          Length = 478

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/236 (73%), Positives = 203/236 (86%), Gaps = 5/236 (2%)

Query: 34  EQKIAYL--IFNGYSVTLTAQNLLAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVL 91
           ++ I YL  +F+ Y    ++    AWN ACEA YQ+YWALVIG+P EKEG+I APLSKVL
Sbjct: 245 KESIDYLHSVFSDYKGRNSSCK--AWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVL 302

Query: 92  LNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEAL 151
           L+DGKT+RV+LA  S  E  Q+A+TEY+VLGPKINGCSWVELRP+TSRKHQLRVHCAEAL
Sbjct: 303 LDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEAL 362

Query: 152 GTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRRPEGLEVQKGSVLSKVPLLHLHC 211
           GTPIVGDYKYGWFVH RWKQMP+VDIEPTTGKPY++RRPEGL+VQKGSVLSKVPLLHLHC
Sbjct: 363 GTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHC 422

Query: 212 RELALPNISKFLHVF-EKSPEELHPSLREQPDVLRFVATMPSHMRISWNLMSSYLV 266
           RE+ LPNI+KFLHV  ++  E LH  + ++PD+LRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 423 REMVLPNIAKFLHVMNQQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478


>AT3G19440.1 | Symbols:  | Pseudouridine synthase family protein |
           chr3:6740778-6743132 FORWARD LENGTH=477
          Length = 477

 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 135/229 (58%), Gaps = 8/229 (3%)

Query: 35  QKIAYLIFNGYSVTLTAQNLLAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLND 94
           Q  A ++ + +    T  +        ++  ++Y ALVIG P  + G I APL KV+++D
Sbjct: 249 QTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDD 308

Query: 95  GKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTP 154
           GK+ER+ +  +  +   Q A+TEYRV+    +G +W+ELRPLT RKHQLRVHCAE LGTP
Sbjct: 309 GKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTP 368

Query: 155 IVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRRPEGLEVQKGSVLSKVPLLHLHCREL 214
           IVGDYKYGW  H   +     +  PT     +   P GL++  G V SK P LHLH +++
Sbjct: 369 IVGDYKYGWQAHKAREPFVSSENNPTK----QSSSPFGLDLDGGDVSSKQPHLHLHSKQI 424

Query: 215 ALPNISKFLHVFEKSPEELHPSLREQPDVLRFVATMPSHMRISWNLMSS 263
            LPNIS+ L   + S +     L      L+F A +PSHM++S+NL+ S
Sbjct: 425 DLPNISQLLEKMQVSSDSDISDLD----SLKFDAPLPSHMQLSFNLLKS 469