Miyakogusa Predicted Gene

Lj0g3v0316469.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316469.1 tr|I3SLV8|I3SLV8_LOTJA ATP synthase gamma chain
OS=Lotus japonicus PE=2 SV=1,98.47,0,seg,NULL; no description,NULL;
ATP-synt,ATPase, F1 complex, gamma subunit; ATPASEGAMMA,ATPase, F1
co,CUFF.21467.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33040.1 | Symbols: ATP3 | gamma subunit of Mt ATP synthase |...   403   e-113
AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit...    74   1e-13
AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit...    69   5e-12

>AT2G33040.1 | Symbols: ATP3 | gamma subunit of Mt ATP synthase |
           chr2:14018978-14021047 REVERSE LENGTH=325
          Length = 325

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/267 (74%), Positives = 223/267 (83%), Gaps = 5/267 (1%)

Query: 1   MAMAAALRREGK----XXXXXXXXXXXXXXXXXXDQTLNGFRSISTQIVRNRMKSVKNIQ 56
           MAMA   RREG+                      ++ L G RSISTQ+VRNRMKSVKNIQ
Sbjct: 1   MAMAV-FRREGRRLLPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQ 59

Query: 57  KITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGLCGG 116
           KITKAMKMVAASKLRAVQ RAENSRGLWQPFTALLGD  S+DVKK+V+VT+SSDKGLCGG
Sbjct: 60  KITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGG 119

Query: 117 INSTSVKISRALSKLNAGPDKETKYVILGEKAKAQLIRDSKQDILLSLTELQKNPLNYTQ 176
           INST VK+SRAL KLNAGP+KE ++VI+GEKAKA + RDSK DI+LS+TEL KNPLNY Q
Sbjct: 120 INSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQ 179

Query: 177 VSVLADDILKNVEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELDSYE 236
           VSVLADDILKNVEFDALRIV+NKFHSVV F PTVSTVLSPEI+E+E+E GG LGELDSYE
Sbjct: 180 VSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYE 239

Query: 237 IEGGDSKSEILQNLSEFQFSCVMFNAV 263
           IEGG++K EILQNL+EFQFSCVMFNAV
Sbjct: 240 IEGGETKGEILQNLAEFQFSCVMFNAV 266


>AT4G04640.1 | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit
           protein | chr4:2350761-2351882 REVERSE LENGTH=373
          Length = 373

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 23/189 (12%)

Query: 45  VRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGD------ATSVD 98
           +R+R+ SVKN QKIT+AMK+VAA+K+R  Q    N R   +    +L +         VD
Sbjct: 56  LRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVD 115

Query: 99  --------VKKNVIVTVSSDKGLCGGINSTSVKISRALSKLNAGPDKETKYVILGEKAKA 150
                   VKK  +V V+ D+GLCGG N+  +K + A  K   G   E   + +G+K  +
Sbjct: 116 VPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNS 175

Query: 151 QLIRDS--KQDILLSLTELQKNPLNYTQVSVLADDILK---NVEFDALRIVFNKFHSVVQ 205
             +R      D  L    L        +   +ADD+     + E D + +++ KF S+V+
Sbjct: 176 YFLRRPYIPVDKYLEAGTLP----TAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLVK 231

Query: 206 FYPTVSTVL 214
             P + T+L
Sbjct: 232 SEPVIHTLL 240


>AT1G15700.1 | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit
           protein | chr1:5402629-5403789 REVERSE LENGTH=386
          Length = 386

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 30/193 (15%)

Query: 45  VRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALL----------GDA 94
           +R R+ SVKN QKIT+AM++VAA+++R    RA+++    +PFT  L             
Sbjct: 66  LRERIDSVKNTQKITEAMRLVAAARVR----RAQDAVIKGRPFTETLVEILYSINQSAQL 121

Query: 95  TSVD--------VKKNVIVTVSSDKGLCGGINSTSVKISRALSKLNAGPDKETKYVIL-- 144
             +D        VK+  +V V+ DKGLCGG N+   K  +A  ++     +    V++  
Sbjct: 122 EDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTK--KATLRVQELKQRGIDCVVISV 179

Query: 145 GEKAKAQLIRDSKQDILLSLTELQKNPLNYTQVSVLADDILK---NVEFDALRIVFNKFH 201
           G+K  A   R  + D+   +      P    +  V+ADD+     + E D + +V+ KF 
Sbjct: 180 GKKGNAYFSRRDEFDVDKCIEGGGVFP-TTKEAQVIADDVFSLFVSEEVDKVELVYTKFV 238

Query: 202 SVVQFYPTVSTVL 214
           S+V+  P + T+L
Sbjct: 239 SLVKSDPVIHTLL 251