Miyakogusa Predicted Gene

Lj0g3v0316399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316399.1 tr|I0Z940|I0Z940_9CHLO Methionine--tRNA ligase
OS=Coccomyxa subellipsoidea C-169 GN=metG PE=3
SV=1,48.48,1e-18,Anticodon-binding domain of a subclass of class I
aminoacyl-tRNA synthetases,Aminoacyl-tRNA syntheta,CUFF.21383.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55400.1 | Symbols: OVA1 | methionyl-tRNA synthetase / methio...   162   6e-41
AT3G55400.2 | Symbols: OVA1 | methionyl-tRNA synthetase / methio...    55   1e-08

>AT3G55400.1 | Symbols: OVA1 | methionyl-tRNA synthetase /
           methionine--tRNA ligase / MetRS (cpMetRS) |
           chr3:20535809-20538999 REVERSE LENGTH=616
          Length = 616

 Score =  162 bits (409), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/100 (72%), Positives = 86/100 (86%)

Query: 1   MEIGNIGNSYMDERAPWSPFKQGGAASEAAAKDIVIILETVRIIAVALFPVSPSLSWRIY 60
           +EIGN GN+YMD+RAPW  FKQGG ++E AAKD+VIILE +R+IAVAL PV+P LS RIY
Sbjct: 482 LEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPVAPCLSLRIY 541

Query: 61  AQLGYSRDQFDAATWSDTRWGGLKGGQVMAQPKPVFARIE 100
           +QLGY+ DQF++ TWSDT+WGGLKGGQVM Q  PVFARIE
Sbjct: 542 SQLGYTEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIE 581


>AT3G55400.2 | Symbols: OVA1 | methionyl-tRNA synthetase /
           methionine--tRNA ligase / MetRS (cpMetRS) |
           chr3:20536263-20538999 REVERSE LENGTH=533
          Length = 533

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 1   MEIGNIGNSYMDERAPWSPFKQGGAASEAAAK 32
           +EIGN GN+YMD+RAPW  FKQGG ++E AAK
Sbjct: 482 LEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAK 513