Miyakogusa Predicted Gene

Lj0g3v0316219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316219.1 Non Chatacterized Hit- tr|F6HCT8|F6HCT8_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,61.02,2e-16,
,CUFF.21368.1
         (59 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22660.2 | Symbols:  | Protein of unknown function (duplicate...    81   1e-16
AT2G22660.1 | Symbols:  | Protein of unknown function (duplicate...    80   4e-16
AT4G37900.1 | Symbols:  | Protein of unknown function (duplicate...    79   4e-16

>AT2G22660.2 | Symbols:  | Protein of unknown function (duplicated
          DUF1399) | chr2:9627737-9630840 FORWARD LENGTH=819
          Length = 819

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 5  QEFEWVEAQNLVLSKDLIGTAKQQLLFLAEIDRNRCLYDGPVLHRAIYRYKFCWL 59
           E EW+EAQ + +S DL+  AKQ LLFL  +DRNR LYDGP L +AIYRY  CWL
Sbjct: 7  HEVEWLEAQKIEISVDLLAAAKQHLLFLETVDRNRWLYDGPALEKAIYRYNACWL 61


>AT2G22660.1 | Symbols:  | Protein of unknown function (duplicated
          DUF1399) | chr2:9627737-9629957 FORWARD LENGTH=586
          Length = 586

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 5  QEFEWVEAQNLVLSKDLIGTAKQQLLFLAEIDRNRCLYDGPVLHRAIYRYKFCWL 59
           E EW+EAQ + +S DL+  AKQ LLFL  +DRNR LYDGP L +AIYRY  CWL
Sbjct: 7  HEVEWLEAQKIEISVDLLAAAKQHLLFLETVDRNRWLYDGPALEKAIYRYNACWL 61


>AT4G37900.1 | Symbols:  | Protein of unknown function (duplicated
          DUF1399) | chr4:17821737-17824445 REVERSE LENGTH=787
          Length = 787

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 41/58 (70%)

Query: 2  KTKQEFEWVEAQNLVLSKDLIGTAKQQLLFLAEIDRNRCLYDGPVLHRAIYRYKFCWL 59
          + +Q  EW EAQ + +S DL+  AK+ LLFL  +DRNRCLYDGP L RAIYRY   WL
Sbjct: 4  EKEQTLEWNEAQKIDISVDLLAAAKKHLLFLGAVDRNRCLYDGPALQRAIYRYNAYWL 61