Miyakogusa Predicted Gene

Lj0g3v0316139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316139.1 Non Chatacterized Hit- tr|B9FL37|B9FL37_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,38.91,0.0000000005,seg,NULL; CSTF_C,Transcription termination
and cleavage factor C-terminal domain; CLEAVAGE
STIMULATI,NODE_9000_length_1337_cov_101.720268.path2.1
         (345 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73840.1 | Symbols: ESP1 | hydroxyproline-rich glycoprotein f...    90   3e-18
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |...    52   6e-07

>AT1G73840.1 | Symbols: ESP1 | hydroxyproline-rich glycoprotein
           family protein | chr1:27763937-27766328 REVERSE
           LENGTH=388
          Length = 388

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 102/203 (50%), Gaps = 20/203 (9%)

Query: 148 ASSQLQQ-PLQAPGFPHMXXXXXXXXXXXXXSASSFHPQY-PPQMGSNLGFQHAGA-SHN 204
           +S+QLQQ P+ + G PH+              +  +H QY   Q G N GFQH GA + +
Sbjct: 201 SSTQLQQQPMHSGGGPHVAQQQ----------SRPYHHQYGQAQTGPNTGFQHHGAPTQH 250

Query: 205 LQQSMFHPGAKPPASVGSAFTQGXXXXXXXXXXXXXYPVGNMPFGHDFGNQGGNAMQVDR 264
           L Q M+H G +PPAS G  F QG             Y  G    G    NQ    M  DR
Sbjct: 251 LSQPMYHSGNRPPASGGPQFPQGQPHLPSQPT----YQGGGQYRGDYNNNQLAGLMAQDR 306

Query: 265 VSRMHGGHSE--NLAQLSGPLGPPSLVSGQMGAANQPLRPPGLTPDMEKALLQQVMSLTP 322
                 G SE  N+  L G    P       G    P     ++ +MEKALLQQVMSLTP
Sbjct: 307 GPSWMAGQSESSNITHLPGLGPVPPPSQVGPGGGPPPRPA-PISAEMEKALLQQVMSLTP 365

Query: 323 EQINHLPPEQRNQVLQLQQMLRQ 345
           EQIN LPPEQRNQVLQLQQ+LRQ
Sbjct: 366 EQINLLPPEQRNQVLQLQQILRQ 388


>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
           chr1:26999606-27001850 FORWARD LENGTH=461
          Length = 461

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 34/41 (82%)

Query: 305 LTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           ++PD++  LLQQVM+LTPEQ+  L PEQ+ +VL+LQQ L+Q
Sbjct: 414 ISPDVQSTLLQQVMNLTPEQLRLLTPEQQQEVLKLQQALKQ 454