Miyakogusa Predicted Gene

Lj0g3v0316049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316049.1 Non Chatacterized Hit- tr|I3S2N8|I3S2N8_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2 SV,61.84,3e-18,no
description,NULL,CUFF.21356.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10210.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2 calcium...    61   3e-10
AT5G65030.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    52   1e-07

>AT5G10210.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2
           calcium-dependent membrane targeting
           (InterPro:IPR000008); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT5G65030.1); Has 1807
           Blast hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:3206236-3206829 FORWARD LENGTH=197
          Length = 197

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 28/151 (18%)

Query: 10  WNESFSLDCSCPEEFFETLQKESLVLELRQSNGAATKVLRRIFGGSRLVGRGGIPWKTIL 69
           WN+SF L+C   E   E L+++S+V ELR+     T  L++ +  S LVGRG I WK+++
Sbjct: 63  WNQSFGLECQGNETAVEELKQQSVVFELRRRK--TTPFLKK-WSKSELVGRGKIFWKSVI 119

Query: 70  ESQNMEFKEWVKID--------SCDGDSSTTFSVPEVQVEIKIKVVASEKKDNSSKRLNK 121
           E+  ME + +V +D         CD           + ++I +KV AS  K  ++KR+  
Sbjct: 120 ETDGMEIERFVVMDETKDHVLEDCDKHKP-------LLLKIALKVQAS--KIVNTKRVED 170

Query: 122 WNEC-GCKHGHDHHAWCSAEDYHVFSFGAAL 151
             EC  C+        C+  DY  F    AL
Sbjct: 171 LCECKDCRT-------CNCVDYEAFVVACAL 194


>AT5G65030.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G10210.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:25975697-25976305
           REVERSE LENGTH=202
          Length = 202

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 2   VSSKSNPF-WNESFSLDCSCPEEFFETLQKESLVLELRQSNGAATKVLRRIFGGSRLVGR 60
           +SSKS+   W++SF L+C   E   + L+++ +V ELR+          R    S +VGR
Sbjct: 53  LSSKSDQLMWDQSFGLECQGDEAAVKELKQQRVVFELRRKK---ISTFLRKSSKSEVVGR 109

Query: 61  GGIPWKTILESQNMEFKEWVKIDSCDGDSSTTFSVPE--VQVEIKIKVVASEKKDNSSKR 118
           G + W+++ ES  ME +  V +    G+S       E  + ++I +KV A E+ +    +
Sbjct: 110 GEVSWESVFESPGMEIERLVVM----GESKNWVLEDERPLLLKIALKVQALEEMEKMLIK 165

Query: 119 LNKWNE-CGCKHGHDHHAWCSAEDYHVFSFGAALEAF 154
            +K  E   C         CS  DY  F+   AL+  
Sbjct: 166 NDKKTEKLCCVCSSRDCGSCSCLDYEAFALVCALDCI 202