Miyakogusa Predicted Gene
- Lj0g3v0315759.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0315759.1 Non Chatacterized Hit- tr|B7PZE0|B7PZE0_IXOSC
Exosome component, putative OS=Ixodes scapularis
GN=Is,35.4,5e-16,HRDC,Helicase/RNase D C-terminal, HRDC domain;
HRDC-like,HRDC-like; POLYMYOSITIS/SCLERODERMA AUTOANT,CUFF.21330.1
(463 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 335 4e-92
AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonucle... 211 1e-54
AT1G54440.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 211 1e-54
AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 53 3e-07
AT2G32415.2 | Symbols: | Polynucleotidyl transferase, ribonucle... 53 4e-07
>AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr5:14029871-14035405
REVERSE LENGTH=870
Length = 870
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 222/489 (45%), Positives = 291/489 (59%), Gaps = 69/489 (14%)
Query: 1 MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
++++L + K+ +D PL+EVYKRSYDVC QLYEKELLTENSYLH+YGLQ AGFNA QL
Sbjct: 424 IKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQL 483
Query: 61 AIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPIIPSKLRRLVKSKHPYVEHNLD 120
AIV+GLCEWRD +ARAEDESTGYVLPNK +LEIAK+MP KLRR++KSKHPY+E N+D
Sbjct: 484 AIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIERNVD 543
Query: 121 TVVNIIRHSIQKAAAFEVAAQELKGVHAATASD--VVPVFNGTESTLHKQNSKESFQHQD 178
+VV++IR S+Q AAFE AA LK V D + P+ S++ H
Sbjct: 544 SVVSVIRQSMQHYAAFESAALSLKDVSPGNVMDKNIEPI------------SEKKDLHTG 591
Query: 179 TDIQIKLKSNSLTSELPRDSLTVSEQNKDANTGALSTLEGNG---ATVQVLKKPAGAFGA 235
LK NS E RD L + N + G S L G+ A V++ KKP+ GA
Sbjct: 592 DVASPSLKENSSQLESTRD-LIMGAANTNEGRGLGSGLFGSAKVSAAVRISKKPSSGLGA 650
Query: 236 LLGNSASKRKHDPD-KGMEEIKLEQIRSSVSLPFHSFLGSSEKSKPIVE-APSLASEMSD 293
LLGN+ASK+K D K E++KLEQIRSSV+L FHSF SK E +P + + +
Sbjct: 651 LLGNAASKKKSRTDEKVKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVYGKPEE 710
Query: 294 LHKPASDPVSTSTLDEIILL--DSDIAAEDLEQSN-----------LEDPI--ENRENRS 338
+ ++ P S S D + L DS+ A+E + S + D I EN + +
Sbjct: 711 M--SSTMPASVSKEDGVKELKDDSEEASEIVGTSGRVSESKVSSSEMGDIILLENGDEKK 768
Query: 339 TVSTSGTEDEDVPMSLSELSSNFQKCFQSNNHNTKTRQPQKTDPSGLFQLKPFDYKAA-- 396
+ ED PMSLSELS+NFQKCF+S N K+++ QK + ++PFDY+AA
Sbjct: 769 ------VDAEDEPMSLSELSTNFQKCFKSMN---KSKKAQKQ--TEFLNIEPFDYEAARK 817
Query: 397 -MKFGE-NTARASSRSGDGHIEIEEDSGGKKKRSNRGQGQSTDDLNKPLPQGRRRQAFPA 454
+KFGE + R R E + G+KK S + Q + QG+RRQAFPA
Sbjct: 818 EVKFGEGHKGRQGKR---------EAAAGQKKGSTQEQSE--------FGQGKRRQAFPA 860
Query: 455 SGNRSATFR 463
SGNRS +F+
Sbjct: 861 SGNRSMSFK 869
>AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr1:20323284-20327931
FORWARD LENGTH=639
Length = 639
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 122/154 (79%)
Query: 1 MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
MR++L ++ KE + SD PLVEVYKRSYDVCMQLYEKEL T +SYLH+YG+Q NA QL
Sbjct: 279 MRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQL 338
Query: 61 AIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPIIPSKLRRLVKSKHPYVEHNLD 120
+IV+GLCEWRD +ARA+DESTGYVLPNK++ +IAK+MPI+ ++LRRL+KSK PY+E N D
Sbjct: 339 SIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNFD 398
Query: 121 TVVNIIRHSIQKAAAFEVAAQELKGVHAATASDV 154
V+++IR S+Q AAAFE Q LK T ++
Sbjct: 399 AVISVIRRSMQNAAAFEPVVQSLKDRRPETVVEM 432
>AT1G54440.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr1:20323284-20327931
FORWARD LENGTH=637
Length = 637
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 122/154 (79%)
Query: 1 MRIKLFSLPKEFDSSDPPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQL 60
MR++L ++ KE + SD PLVEVYKRSYDVCMQLYEKEL T +SYLH+YG+Q NA QL
Sbjct: 279 MRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQL 338
Query: 61 AIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPIIPSKLRRLVKSKHPYVEHNLD 120
+IV+GLCEWRD +ARA+DESTGYVLPNK++ +IAK+MPI+ ++LRRL+KSK PY+E N D
Sbjct: 339 SIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNFD 398
Query: 121 TVVNIIRHSIQKAAAFEVAAQELKGVHAATASDV 154
V+++IR S+Q AAAFE Q LK T ++
Sbjct: 399 AVISVIRRSMQNAAAFEPVVQSLKDRRPETVVEM 432
>AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr2:13761307-13765421
REVERSE LENGTH=891
Length = 891
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 22/104 (21%)
Query: 13 DSSDPP-----LVEVYKRSYDVCMQLYEKELLTENS----------YLHIYGL---QGAG 54
DSS P L+E +RS C+QLY KE TE+ Y H+ G
Sbjct: 292 DSSSPDDRFHFLLEASRRSNMTCLQLYTKE--TEDFPGSAASSSIIYRHLNGHGDKSNIS 349
Query: 55 FNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMP 98
NA++L V LC WRD++ R DEST YVL +++++ ++ + P
Sbjct: 350 LNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQP 391
>AT2G32415.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr2:13761386-13765421
REVERSE LENGTH=872
Length = 872
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 22/104 (21%)
Query: 13 DSSDPP-----LVEVYKRSYDVCMQLYEKELLTENS----------YLHIYGL---QGAG 54
DSS P L+E +RS C+QLY KE TE+ Y H+ G
Sbjct: 292 DSSSPDDRFHFLLEASRRSNMTCLQLYTKE--TEDFPGSAASSSIIYRHLNGHGDKSNIS 349
Query: 55 FNAQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMP 98
NA++L V LC WRD++ R DEST YVL +++++ ++ + P
Sbjct: 350 LNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQP 391