Miyakogusa Predicted Gene

Lj0g3v0315359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315359.1 tr|B9HHZ5|B9HHZ5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564123 PE=4
SV=1,56.76,0.000000000002,coiled-coil,NULL; seg,NULL; GYF domain,GYF;
DUF4339,Domain of unknown function DUF4339,CUFF.21302.1
         (233 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16260.1 | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) f...   171   3e-43

>AT5G16260.1 | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs)
           family protein | chr5:5311363-5315496 FORWARD LENGTH=519
          Length = 519

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 121/206 (58%), Gaps = 27/206 (13%)

Query: 11  PQISGDNV--TELGWYVLGQDQQQLGPYAFSELREHFSNGYIFENTLVWSEGRSEWQPLS 68
           P  +G  V  T++GWY+LG++QQ LGPY FSEL  HF NGY+ E TLVW++GRSEWQPLS
Sbjct: 11  PSSTGATVAATDVGWYILGENQQNLGPYTFSELCNHFRNGYLLETTLVWADGRSEWQPLS 70

Query: 69  SISSLWAEINQG--------------GPDSST-------AVSAHEVDEFERWQREIQEAE 107
           +I  L + I+                G ++ T         SA   DEFE+WQREI++AE
Sbjct: 71  AIPDLMSRISGAEIAYPAVGSSGLINGSNAGTRQEKQDYTASASTEDEFEKWQREIKDAE 130

Query: 108 AQVEGSEFGSISGNVGDSVAGEDFERPSXXXXXXXXXXXXXXXKYKWDRNFRVWVPQEHT 167
           A+ E  + GS+SG     +  +D ER S               KYKWDR  RVWVPQ+  
Sbjct: 131 AEAERLKNGSVSGT---ELVEDDHERASSPPEGEDEFTDDDGTKYKWDRARRVWVPQDDP 187

Query: 168 S-GSTEPYGVEEMTFLKEDEVFPLAN 192
             GS +PYG+EEMTF KEDEVFP  N
Sbjct: 188 PLGSVDPYGLEEMTFAKEDEVFPTIN 213