Miyakogusa Predicted Gene

Lj0g3v0315349.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0315349.1 Non Chatacterized Hit- tr|F2UK21|F2UK21_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,36.91,3e-19,seg,NULL; RRM_5,NULL; RNA-binding domain, RBD,NULL;
RRM,RNA recognition motif domain; RNA recognitio,CUFF.21301.1
         (162 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16260.1 | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) f...   211   2e-55
AT2G16940.1 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    55   3e-08
AT2G16940.2 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    54   3e-08
AT2G16940.3 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    54   4e-08
AT5G09880.1 | Symbols:  | Splicing factor, CC1-like | chr5:30816...    54   6e-08

>AT5G16260.1 | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs)
           family protein | chr5:5311363-5315496 FORWARD LENGTH=519
          Length = 519

 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/161 (65%), Positives = 120/161 (74%)

Query: 1   MSVTPAKFEQKGDXXXXXXXXXXXXXXXXXXXXXMLGWGGRDDAKLSIPATVILRYMFSP 60
           MSV+ AKFEQKG+                     +LGWGG DD+K+SIPATV+LRYMFSP
Sbjct: 357 MSVSRAKFEQKGERFITKQTDNKKKKKLKKVEQKLLGWGGTDDSKVSIPATVVLRYMFSP 416

Query: 61  AEMRADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVRFKDRKDAQTCIDTMNG 120
           AE+ ADE+L  ELEEDVKEE  K GP DSVKVCE+HPQGVVLVRFKDR+DAQ CI+ MNG
Sbjct: 417 AELMADEDLVAELEEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476

Query: 121 RWFGGRQIHASEDDGLVNHALVRDLDEDAKRLEQFGAELEG 161
           RW+  RQIHAS DDG VNHA VRD D +A+RL+QF AELE 
Sbjct: 477 RWYAKRQIHASLDDGSVNHATVRDFDLEAERLDQFAAELEA 517


>AT2G16940.1 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=561
          Length = 561

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 46  LSIPA-TVILRYMFSPAEMRADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVR 104
           + +P+  ++L+ MF P+    +++   +++EDVKEEC+K G ++ + V +N   G V +R
Sbjct: 460 IGVPSECLLLKNMFDPS-TETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNS-VGFVYLR 517

Query: 105 FKDRKDAQTCIDTMNGRWFGGRQIHAS 131
           F++ + A      ++GRWF G+ I A+
Sbjct: 518 FENAQAAIGAQRALHGRWFAGKMITAT 544


>AT2G16940.2 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=610
          Length = 610

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 46  LSIPA-TVILRYMFSPAEMRADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVR 104
           + +P+  ++L+ MF P+    +++   +++EDVKEEC+K G ++ + V +N   G V +R
Sbjct: 509 IGVPSECLLLKNMFDPS-TETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNS-VGFVYLR 566

Query: 105 FKDRKDAQTCIDTMNGRWFGGRQIHAS 131
           F++ + A      ++GRWF G+ I A+
Sbjct: 567 FENAQAAIGAQRALHGRWFAGKMITAT 593


>AT2G16940.3 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=599
          Length = 599

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 46  LSIPA-TVILRYMFSPAEMRADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVR 104
           + +P+  ++L+ MF P+    +++   +++EDVKEEC+K G ++ + V +N   G V +R
Sbjct: 498 IGVPSECLLLKNMFDPS-TETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNS-VGFVYLR 555

Query: 105 FKDRKDAQTCIDTMNGRWFGGRQIHAS 131
           F++ + A      ++GRWF G+ I A+
Sbjct: 556 FENAQAAIGAQRALHGRWFAGKMITAT 582


>AT5G09880.1 | Symbols:  | Splicing factor, CC1-like |
           chr5:3081646-3085179 REVERSE LENGTH=527
          Length = 527

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 52  VILRYMFSPAEMRADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVRFKDRKDA 111
           ++L+ MF PA    + N  LE+ +DV +EC+K GP++ + V +N   G V +RF+  + A
Sbjct: 437 LLLKNMFDPA-TETEPNFDLEIRDDVADECSKYGPVNHIYVDKNS-AGFVYLRFQSVEAA 494

Query: 112 QTCIDTMNGRWFGGRQIHAS 131
                 M+ RWF  + I A+
Sbjct: 495 AAAQRAMHMRWFAQKMISAT 514