Miyakogusa Predicted Gene

Lj0g3v0314979.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314979.1 tr|C1EHQ8|C1EHQ8_MICSR Predicted protein
(Fragment) OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MI,56.94,3e-19,HAD-like,HAD-like domain; seg,NULL,CUFF.21275.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39970.1 | Symbols:  | Haloacid dehalogenase-like hydrolase (...   141   1e-34
AT3G48420.1 | Symbols:  | Haloacid dehalogenase-like hydrolase (...    58   1e-09

>AT4G39970.1 | Symbols:  | Haloacid dehalogenase-like hydrolase
           (HAD) superfamily protein | chr4:18536678-18538429
           REVERSE LENGTH=316
          Length = 316

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 71/80 (88%)

Query: 57  LQALIFDCDGVILESEHLHRQAYNDAFVHFNVRCNSSSPEPLNWDIEFYDVLQNTIGGGK 116
           L+ALIFDCDGVILESE+LHRQAYNDAF HF+VRC  SS E L+W +EFYD  QN +GGGK
Sbjct: 63  LEALIFDCDGVILESENLHRQAYNDAFSHFDVRCPPSSSESLDWSLEFYDKFQNLVGGGK 122

Query: 117 PKMRWYFKEHGWPSSTLFET 136
           PKMRWYFKE+GWP+ST+F++
Sbjct: 123 PKMRWYFKENGWPTSTIFDS 142


>AT3G48420.1 | Symbols:  | Haloacid dehalogenase-like hydrolase
           (HAD) superfamily protein | chr3:17929743-17931551
           FORWARD LENGTH=319
          Length = 319

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)

Query: 58  QALIFDCDGVILESEH-LHRQAYNDAFVHFNVRCNSSSPEPLNWDIEFYDVLQNTIGGGK 116
            AL+FDCDGV++++E   HR ++ND F   ++         + WD++ Y  L   IGGGK
Sbjct: 77  SALLFDCDGVLVDTEKDGHRISFNDTFKERDLN--------VTWDVDLYGELLK-IGGGK 127

Query: 117 PKMRWYFKEHGWP 129
            +M  YF + GWP
Sbjct: 128 ERMTAYFNKVGWP 140