Miyakogusa Predicted Gene

Lj0g3v0314959.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314959.1 tr|Q4ABN9|Q4ABN9_BRARP 80A08_28 OS=Brassica rapa
subsp. pekinensis GN=80A08_28 PE=4 SV=1,45.24,3e-19, ,CUFF.22265.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   103   3e-23
AT3G13898.1 | Symbols:  | unknown protein; LOCATED IN: endomembr...    57   3e-09
AT4G37810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    55   1e-08

>AT5G10310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 17 plant structures; EXPRESSED
           DURING: 10 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G13898.1);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:3241666-3242127 REVERSE
           LENGTH=122
          Length = 122

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 67/111 (60%), Gaps = 24/111 (21%)

Query: 26  VSTSNQP-KPAISPRELLFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNS----- 79
           VS+  QP +P ISP+  L E+K RLGS PPSCHN+CN CHPCMA+QVPTLPT +      
Sbjct: 24  VSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVN 83

Query: 80  ------VNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
                 V PP  L+                +YSNYKP+GWKCHC  HF+NP
Sbjct: 84  PFSGGFVRPPSSLTTVLD------------QYSNYKPMGWKCHCNGHFYNP 122


>AT3G13898.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G10310.1). |
           chr3:4584011-4584334 FORWARD LENGTH=107
          Length = 107

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 21/79 (26%)

Query: 39  RELLFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYP 98
           +E + + + R+GS PPSC  KC  C PC A+Q PT+ +   ++P                
Sbjct: 47  KEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISSIPHLSP---------------- 90

Query: 99  SLQGTRYSNYKPLGWKCHC 117
                 Y+NY+P GW+CHC
Sbjct: 91  -----HYANYQPEGWRCHC 104


>AT4G37810.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits
           to 149 proteins in 15 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:17780970-17781544 FORWARD LENGTH=128
          Length = 128

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 49  LGSMPPSCHN-KCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSN 107
           +GS PP C   +C  C  C A+QVPT P    ++ P   S ++S E       +G   +N
Sbjct: 53  IGSRPPRCERVRCRSCGHCEAIQVPTNP-QTKLHSPLTTSSSSSSETIHLDYTRGDDSTN 111

Query: 108 YKPLGWKCHCGDHFFNP 124
           YKP+ WKC CG+  +NP
Sbjct: 112 YKPMSWKCKCGNSIYNP 128