Miyakogusa Predicted Gene

Lj0g3v0314899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314899.1 tr|E4V2B9|E4V2B9_ARTGP Nucleolar complex protein
2 OS=Arthroderma gypseum (strain ATCC MYA-4604 / CB,29.44,4e-19,RAD4
PROTEIN RELATED,NULL; NUCLEOLAR COMPLEX 2 AND
RAD4-RELATED,Uncharacterised protein family UPF01,CUFF.21274.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55510.1 | Symbols: RBL | Noc2p family | chr3:20579232-205821...   272   1e-73
AT2G18220.1 | Symbols:  | Noc2p family | chr2:7928254-7931851 FO...   154   5e-38

>AT3G55510.1 | Symbols: RBL | Noc2p family | chr3:20579232-20582124
           FORWARD LENGTH=594
          Length = 594

 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 120/190 (63%), Positives = 158/190 (83%)

Query: 3   VQIINGVALLFPGPRYLPLRLRCIQWLNHLACSSGVFIPVTSLVLDVLEYKITKDGGKPG 62
           VQ+INGVA L  GPRYL LR++CI WLNHL+ +SG+FIP+ SLVLD+LEYK T DG K  
Sbjct: 396 VQVINGVAQLIIGPRYLLLRVKCIHWLNHLSRTSGIFIPIASLVLDMLEYKTTNDGEKQE 455

Query: 63  KVFEPLSSVKLPKHWLKSQDFQEECVLSAIELLSEHFAQWSYHLSFPELAIAPLIHLKKL 122
           +  E +S+VKLPK+WLKSQ+FQE+C+ S IELL+ HFAQWS+H+SFP+LA  P++ LKK 
Sbjct: 456 QKLEAVSTVKLPKNWLKSQNFQEQCIFSVIELLAVHFAQWSFHISFPDLATIPVMRLKKF 515

Query: 123 FERTSIESLKRVIKRFIDQVELNVDYVQKKRDEVPFSPKDQQSVESFLQAEKRNGNTPFT 182
            ER+++E LKRV+KRFI+QVE N+++VQ+KRD+V FSP DQQS ++F+Q EK+N N P+T
Sbjct: 516 HERSTMEGLKRVVKRFIEQVESNIEFVQRKRDDVTFSPNDQQSADTFMQLEKQNANAPYT 575

Query: 183 QYYKSIMSKA 192
           QYY+SI+ KA
Sbjct: 576 QYYQSIIDKA 585


>AT2G18220.1 | Symbols:  | Noc2p family | chr2:7928254-7931851
           FORWARD LENGTH=764
          Length = 764

 Score =  154 bits (389), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 3/195 (1%)

Query: 3   VQIINGVALLFPGPRYLPLRLRCIQWLNHLACSSGVFIPVTSLVLDVLEYKITKD--GGK 60
            QII GVA L P  RY PLRLRC++ LN LA ++G FIPV+ L++D+LE K       G 
Sbjct: 418 AQIITGVARLVPTARYTPLRLRCVRMLNRLAAATGTFIPVSMLLVDMLEMKELNRPPTGG 477

Query: 61  PGKVFEPLSSVKLPKHWLKSQDFQEECVLSAIELLSEHFAQWSYHLSFPELAIAPLIHLK 120
            GK  +  + +K+ K  +K++ FQE CV + +E L EH +QWS  ++F EL+  P I L+
Sbjct: 478 VGKGVDLRTLLKVSKPAVKTRAFQEACVYTVVEELVEHLSQWSCSVAFFELSFIPTIRLR 537

Query: 121 KLFERTSIESLKRVIKRFIDQVELNVDYVQKKRDEVPFSPKDQQSVESFLQAEKRNGNTP 180
              + T  E  ++ +K+ I Q+E N ++V KKR  + F P D  + ESFL+ EK+ G TP
Sbjct: 538 SFCKSTKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPND-LAAESFLEDEKKAGKTP 596

Query: 181 FTQYYKSIMSKAASR 195
             QY + I  +A  R
Sbjct: 597 LLQYAEIIRQRAQQR 611