Miyakogusa Predicted Gene

Lj0g3v0314699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314699.1 Non Chatacterized Hit- tr|B8AGG1|B8AGG1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,69.05,2e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; seg,NULL,CUFF.21260.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogene...   119   9e-28
AT1G68070.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   114   3e-26
AT3G61180.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    90   9e-19
AT4G11680.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...    87   4e-18
AT1G63170.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...    79   1e-15
AT1G12760.2 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...    58   3e-09
AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...    58   3e-09

>AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogenesis
           | chr2:324499-325895 FORWARD LENGTH=359
          Length = 359

 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 78/168 (46%)

Query: 3   WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
           WN A V+ SA ML  TV E+PN PIR+WI  Y LQCL HVVLVW EY             
Sbjct: 84  WNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLE 143

Query: 63  LVEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQDA 122
             +                      F KRCE+INT +SFIWW++GFYWVV GGD L+ +A
Sbjct: 144 SYDHEDYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEA 203

Query: 123 PRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAG 170
           P LYWL              CVV                    YAVAG
Sbjct: 204 PNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAG 251


>AT1G68070.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:25515412-25516767 REVERSE
           LENGTH=343
          Length = 343

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 1   MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
           M WN AFV+V+  ML     E+PN PIR+WI GYA+QCL+HVVLVW E+           
Sbjct: 73  MLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVLVWLEFRKRNARSRPGD 132

Query: 61  XXLVEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQ 120
               +                       TK CE++NT +SF+WW+VGFYW+VSGGD+L+Q
Sbjct: 133 LEAAQATNQDSEDEDNDERFLS------TKTCESMNTIISFVWWIVGFYWLVSGGDILLQ 186

Query: 121 DAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
           +A  LYWL              CVV                    YAVAGQ
Sbjct: 187 NATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQ 237


>AT3G61180.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:22645680-22647290 FORWARD LENGTH=379
          Length = 379

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 3   WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXX----- 57
           WN  FV+VS A+L  +  E P+ P+RLWI+GY +QCL HV  V  EY             
Sbjct: 91  WNFLFVIVSIAILGFSSDEDPDVPLRLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSG 150

Query: 58  --XXXXXLVEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGG 115
                   +                       FTK  E+ NT  SF+WW++GFYWV +  
Sbjct: 151 EDSSNHESLSGSEDESDGYSINNTDDDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADT 210

Query: 116 DMLMQDAPRLYWL 128
           + L Q +P+LYWL
Sbjct: 211 EALAQSSPQLYWL 223


>AT4G11680.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr4:7053737-7055516 REVERSE LENGTH=390
          Length = 390

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 62/127 (48%), Gaps = 1/127 (0%)

Query: 3   WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
           WN+AFV +  A+L  +  E+PN P+R+W+VGY +QC LH+  V  EY             
Sbjct: 116 WNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGG 175

Query: 63  LVEXXXXXXXX-XXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQD 121
                                       K  E+ NT  SFIWW++GFYWV +GG  L  D
Sbjct: 176 GSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSD 235

Query: 122 APRLYWL 128
           +P+LYWL
Sbjct: 236 SPQLYWL 242


>AT1G63170.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:23425574-23427073 FORWARD
           LENGTH=381
          Length = 381

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 3   WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
           WN+AFVVV+ A+L  +  E PN P+R+WI+GY LQC++H+V V  EY             
Sbjct: 81  WNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSP 140

Query: 63  LVEXX----------------XXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMV 106
                                                    F K  E+ NT +SFIWW++
Sbjct: 141 RSSSSSSSSSSSMDEEEGLGLSRNSDERYLELGQLENENNSFAKHLESANTMISFIWWVI 200

Query: 107 GFYWVVSGGDMLMQDAPRLYWL 128
           GFYWV SGG  L Q +P+LYWL
Sbjct: 201 GFYWVSSGGQELAQGSPQLYWL 222


>AT1G12760.2 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:4348941-4350512 FORWARD LENGTH=337
          Length = 337

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 90  KRCETINTGVSFIWWMVGFYWVVSGGDMLMQDAPRLYWL 128
           K  E+ NT  SFIWW++GFYWV +GG  L Q++PR+YWL
Sbjct: 143 KHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWL 181



 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 3  WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEY 49
          WN+AFV V+ A+L  +  E P  P+R+W++GYALQC+LH+V V  EY
Sbjct: 36 WNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEY 82


>AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:4348728-4350512 FORWARD LENGTH=408
          Length = 408

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 90  KRCETINTGVSFIWWMVGFYWVVSGGDMLMQDAPRLYWL 128
           K  E+ NT  SFIWW++GFYWV +GG  L Q++PR+YWL
Sbjct: 214 KHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWL 252



 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 3   WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEY 49
           WN+AFV V+ A+L  +  E P  P+R+W++GYALQC+LH+V V  EY
Sbjct: 107 WNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEY 153