Miyakogusa Predicted Gene

Lj0g3v0314369.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314369.1 Non Chatacterized Hit- tr|B4FDL5|B4FDL5_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,58.44,1e-18,uppS:
di-trans,poly-cis-decaprenylcistransferase,
Di-trans-poly-cis-decaprenylcistransferase-like; Up,CUFF.21227.1
         (355 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17570.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...   313   1e-85
AT5G60510.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...   173   1e-43
AT5G60500.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...   168   4e-42
AT5G58770.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...    88   9e-18
AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase | chr2:...    84   2e-16
AT5G58784.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...    83   3e-16
AT5G58780.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...    82   5e-16
AT5G58782.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...    81   1e-15
AT2G23400.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase ...    75   7e-14

>AT2G17570.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr2:7645086-7645973 FORWARD LENGTH=295
          Length = 295

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/350 (48%), Positives = 219/350 (62%), Gaps = 66/350 (18%)

Query: 6   GGITSHLLEGLCCYLRRCVFAILSVGPVPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAA 65
           GG  S LLE +  + RR +F ++S+GP+P HIAFIMDGNRRYAKK  L +G GH+AGF+A
Sbjct: 12  GGRMSQLLEQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLLDGSGHKAGFSA 71

Query: 66  LLSILRYCYELRVRYVTVYAFSIDNFKRKPKEVETFMELMREKIEELLQQESIINEYGVR 125
           L+S+L+YCYEL ++YVT+YAFSIDNF+RKP+EVE+ M+LM EKI+ LL++ESI+++YG+R
Sbjct: 72  LMSMLQYCYELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQYGIR 131

Query: 126 LHFIGNLQLLADPVRHAVEKAMRVTAHNKERVLLICVAYTSRDEIVHAVEESCKDKWNEV 185
           ++FIGNL LL D VR A EK M+ TA N   VLLIC+AY S DEIV AV++SC +K + +
Sbjct: 132 VYFIGNLALLNDQVRAAAEKVMKATAKNSRVVLLICIAYNSTDEIVQAVKKSCINKSDNI 191

Query: 186 QASKEAKVSNDAFARINEGQERNGLDLHFQDSGTKICSRIVDRVEGGVKDGLLEHNAEKH 245
           +AS                      +   +DS + I                     E  
Sbjct: 192 EAS----------------------NYKHEDSDSDI---------------------EGT 208

Query: 246 DCNYSEAEITSCNGLVEITEERRYKQSGLPSIKLVDVEKHMYMAVAPDPDIFIRTSGVAR 305
           D    E +I     LV+I E  +                 M +A  P  DI IR+SG  R
Sbjct: 209 DMENQEKKIQ----LVDIEENMQ-----------------MSVAPNP--DILIRSSGETR 245

Query: 306 LSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQRHHFYLEKKKKQF 355
           LSNFLLWQT    L +P ALWPEIGLRHL+WA+LNFQR+H YLEK+KKQ 
Sbjct: 246 LSNFLLWQTGNTQLCSPAALWPEIGLRHLLWAILNFQRNHSYLEKRKKQL 295


>AT5G60510.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr5:24330721-24331539 FORWARD
           LENGTH=272
          Length = 272

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 125/190 (65%), Gaps = 1/190 (0%)

Query: 7   GITSHLLEGLCCYLRRCVFAILSVGPVPNHIAFIMDGNRRYAKKRNL-GEGDGHRAGFAA 65
           G  + +   L   +R+ +F +L VGP+P +I+FIMDGNRR+AKKRNL G   GHRAGF +
Sbjct: 9   GEFTQIFNALMSLMRKFIFKVLRVGPIPTNISFIMDGNRRFAKKRNLEGLDAGHRAGFIS 68

Query: 66  LLSILRYCYELRVRYVTVYAFSIDNFKRKPKEVETFMELMREKIEELLQQESIINEYGVR 125
           +  IL+YC E+ V YVT+YAF +DNFKR P+EV+  M+LM EK+E  + Q    N  GVR
Sbjct: 69  VKYILQYCKEIGVPYVTLYAFGMDNFKRGPEEVKCVMDLMLEKVELTIDQAVSGNMNGVR 128

Query: 126 LHFIGNLQLLADPVRHAVEKAMRVTAHNKERVLLICVAYTSRDEIVHAVEESCKDKWNEV 185
           + F G+L  L +  R A +K M +T  N++ ++++CVAY++  EIVHAV +SC  K    
Sbjct: 129 IIFAGDLNSLNERFRAATKKLMELTEENRDLIVVVCVAYSTSVEIVHAVRDSCVRKSKTG 188

Query: 186 QASKEAKVSN 195
             S   ++S+
Sbjct: 189 DGSSALELSD 198



 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 59/81 (72%)

Query: 273 GLPSIKLVDVEKHMYMAVAPDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLR 332
           G  +++L D+E+ MY +V P PD+ +RT G  RLSNF+ WQTS   L+  +ALWPE+GL 
Sbjct: 190 GSSALELSDIEECMYTSVVPVPDLVVRTGGGDRLSNFMTWQTSRALLHRTEALWPELGLW 249

Query: 333 HLVWAVLNFQRHHFYLEKKKK 353
           HLVWA+L FQR   YL+KKKK
Sbjct: 250 HLVWAILKFQRMQDYLQKKKK 270


>AT5G60500.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr5:24328815-24329630 FORWARD
           LENGTH=271
          Length = 271

 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 120/174 (68%), Gaps = 1/174 (0%)

Query: 9   TSHLLEGLCCYLRRCVFAILSVGPVPNHIAFIMDGNRRYAKKRNL-GEGDGHRAGFAALL 67
           ++H+   L   +R+ +F +L VGP+P +I+FIMDGNRR+AKK NL G   GHRAGF ++ 
Sbjct: 10  STHIFNALMSLMRKFLFRVLCVGPIPTNISFIMDGNRRFAKKHNLIGLDAGHRAGFISVK 69

Query: 68  SILRYCYELRVRYVTVYAFSIDNFKRKPKEVETFMELMREKIEELLQQESIINEYGVRLH 127
            IL+YC E+ V YVT++AF +DNFKR P+EV+  M+LM EK+E  + Q    N  GVR+ 
Sbjct: 70  YILQYCKEIGVPYVTLHAFGMDNFKRGPEEVKCVMDLMLEKVELAIDQAVSGNMNGVRII 129

Query: 128 FIGNLQLLADPVRHAVEKAMRVTAHNKERVLLICVAYTSRDEIVHAVEESCKDK 181
           F G+L  L +  R A +K M +T  N++ ++++CVAY++  EIVHAV +SC  K
Sbjct: 130 FAGDLDSLNEHFRAATKKLMELTEENRDLIVVVCVAYSTSLEIVHAVRKSCVRK 183



 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 56/77 (72%)

Query: 277 IKLVDVEKHMYMAVAPDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVW 336
           ++L DVE+ MY ++ P PD+ IRT G  RLSNF+ WQTS   L+  +ALWPE+GL HLVW
Sbjct: 193 LELSDVEECMYTSIVPVPDLVIRTGGGDRLSNFMTWQTSRSLLHRTEALWPELGLWHLVW 252

Query: 337 AVLNFQRHHFYLEKKKK 353
           A+L FQR   YL KKKK
Sbjct: 253 AILKFQRMQDYLTKKKK 269


>AT5G58770.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr5:23734396-23735495 FORWARD
           LENGTH=310
          Length = 310

 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 3/141 (2%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H+A IMDGN R+AK R L   DGHRAG  AL  I+  C +  ++ +TV+AFS DN+ 
Sbjct: 77  MPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWI 136

Query: 93  RKPKEVETFMELMREKIEELLQQESIINEYGVRLHFIGNLQLLADPVRHAVEKAMRVTAH 152
           R   E++    L    ++   Q    + +  VR+  IG+   L   +   + +   VT +
Sbjct: 137 RPRIEIDFLFSLFERSLKTEFQN---LAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKN 193

Query: 153 NKERVLLICVAYTSRDEIVHA 173
           N    L++ V Y+ + +++ A
Sbjct: 194 NTRLQLIVAVGYSGKYDVLQA 214



 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query: 278 KLVDVEKHMYMAVAPDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWA 337
           +L++ E        P PD+ IRTSG  R+SNFLLWQ +   L+  + LWP+ G    + A
Sbjct: 235 RLIEEELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFAQELWPDFGRSGFIEA 294

Query: 338 VLNFQRHH 345
           +++FQ+  
Sbjct: 295 LMSFQQRQ 302


>AT2G23410.1 | Symbols: ACPT, CPT | cis-prenyltransferase |
           chr2:9966247-9967741 REVERSE LENGTH=303
          Length = 303

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H+AFI+DGNRR+AK+  L    GH AG   L+ I   C+EL V  V+ +AFS +N+ 
Sbjct: 70  MPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFSTENWG 129

Query: 93  RKPKEVETFMELMREKIEELLQQESI--INEYGVRLHFIGNLQLLADPVRHAVEKAMRVT 150
           R   E++  M L    I+    + +I   +   VR+  IGN   + + +   + +    T
Sbjct: 130 RDKIEIDNLMSL----IQHYRNKSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEAT 185

Query: 151 AHNKERVLLICVAYTSRDEIVHAVEESCK 179
              K + L++ V Y+ + +I+HA +   K
Sbjct: 186 KGYKNKHLIMAVDYSGKFDIMHACKSLVK 214



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 256 SCNGLVEITEERRYKQSGLPSIKLVDVEKHMYMAVAPDPDIFIRTSGVARLSNFLLWQTS 315
           +C  LV+ +E+   ++  +    L++ E     +  P PD+ IRTSG  R+SNF LWQ +
Sbjct: 208 ACKSLVKKSEKGLIREEDVDE-ALIERELLTNCSDFPSPDLMIRTSGEQRISNFFLWQLA 266

Query: 316 TCPLYAPKALWPEIGLRHLVWAVLNFQR 343
              L+     WP+     L+ A+ ++QR
Sbjct: 267 YSELFFSPVFWPDFDKDKLLEALASYQR 294


>AT5G58784.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr5:23739950-23741267 REVERSE
           LENGTH=302
          Length = 302

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 7/154 (4%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H+A I+DGNRR+A+KR LG  +GH AG   L+   + C+ +    ++++AFS +N++
Sbjct: 70  MPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTENWE 129

Query: 93  RKPKEVETFMELMREKIEELLQQESIINEYGVRLHFIGNLQLLADPVRHAVEKAMRVTAH 152
           R   EV+  M L  +    L      +    +++  IGN   L + +   +E+    T  
Sbjct: 130 RPEDEVKCLMALFEKY---LASDMPYLRSDKIKISVIGNRTKLPESLLGLIEEVEEATKS 186

Query: 153 NKERVLLICVAYTSRDEIVHAVEESCKDKWNEVQ 186
            + + L+I + Y+ R +I+ A    CK   N+V+
Sbjct: 187 YEGKNLIIAIDYSGRYDILQA----CKSLANKVK 216



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 292 PDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIG----LRHLVW 336
           P+PD+ IRTSG  R+SNF LWQ++   LY P  LWP+ G    L  L W
Sbjct: 242 PNPDLLIRTSGEQRISNFFLWQSAYTELYFPTVLWPDFGEAEYLEALTW 290


>AT5G58780.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr5:23735755-23737284 REVERSE
           LENGTH=302
          Length = 302

 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 11/151 (7%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H+A IMDGNRR+AK+  L    GH AG   L+     C++L +  V+ +AFS +N+ 
Sbjct: 70  MPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFAFSTENWG 129

Query: 93  RKPKEVETFMEL----MREKIEELLQQESIINEYGVRLHFIGNLQLLADPVRHAVEKAMR 148
           R   EV+  M L    ++ KI+   ++E+       R+  IGNL  + + +   V++   
Sbjct: 130 RHKIEVKCLMSLIQHYLKSKIQYFQREET-------RVSVIGNLTKIPESLLRTVQEIEE 182

Query: 149 VTAHNKERVLLICVAYTSRDEIVHAVEESCK 179
            T   K++ L++ + Y+ R +I+ A +   K
Sbjct: 183 ATRSYKKKHLILAIDYSGRLDILRACKSIVK 213



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 292 PDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQR 343
           P PD+ IRTSG  R+SNF LWQ +   L+    LWP+     L+ A++++QR
Sbjct: 242 PSPDLLIRTSGEQRISNFFLWQLAYTELFFSPVLWPDFDKDKLLEALVSYQR 293


>AT5G58782.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr5:23738306-23739430 REVERSE
           LENGTH=289
          Length = 289

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H+A IMDGNRR+AK+  L    G+ AG   LL     C++L +  V+ +AFS +N+ 
Sbjct: 57  MPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFAFSTENWG 116

Query: 93  RKPKEVETFMELMREKIEELLQQESIINEYGVRLHFIGNLQLLADPVRHAVEKAMRVTAH 152
           R   EV+  M L +  ++  +Q         +R+  IGNL  + + +   V +    T  
Sbjct: 117 RHKIEVKCLMYLFQRYLKSKIQ---FFQSKEIRVSVIGNLAKIPESLLRTVHELEEATKS 173

Query: 153 NKERVLLICVAYTSRDEIVHAVEESCKD--KWNEVQASKEAKVSNDAFAR 200
            K++ L++ + Y+ R +I+ A    CK+  K +E    +E  V    F R
Sbjct: 174 YKKKHLILAIDYSGRFDILGA----CKNIVKKSEQGLIREEDVDETLFER 219



 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 254 ITSCNGLVEITEERRYKQSGLPSIKLVDVEKHMYMAVAPDPDIFIRTSGVARLSNFLLWQ 313
           + +C  +V+ +E+   ++  +    L + E        P PD+ IRTSG  R+SNF LWQ
Sbjct: 192 LGACKNIVKKSEQGLIREEDVDET-LFERELQTRCTEFPSPDLLIRTSGEQRISNFFLWQ 250

Query: 314 TSTCPLYAPKALWPEIGLRHLVWAVLNFQRH 344
            +    +    LWP+   +  + A++++QR 
Sbjct: 251 LAYTEFFFSPVLWPDFDKQKFIEALVSYQRR 281


>AT2G23400.1 | Symbols:  | Undecaprenyl pyrophosphate synthetase
           family protein | chr2:9963978-9965229 REVERSE LENGTH=253
          Length = 253

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)

Query: 33  VPNHIAFIMDGNRRYAKKRNLGEGDGHRAGFAALLSILRYCYELRVRYVTVYAFSIDNFK 92
           +P H++FI+DGNRR+AK+  L    GH AG   ++ I   C+EL +  V+ +AFS +N+ 
Sbjct: 36  MPRHVSFILDGNRRWAKRDGLTTAQGHEAGTKRIIEIAEVCFELGIHTVSAFAFSTENWG 95

Query: 93  RKPKEVETFMELMREKIEELLQQESIINEYGVRLHFIGNLQLLADPVR---HAVEKAMRV 149
           R   EV+  M L    ++  +Q         VR+  IGN   + + +    H +E+A + 
Sbjct: 96  RDKFEVKCLMSLFNHYLKSNIQ---YFQRKEVRVSVIGNKTKIPESLLKEIHEIEEATKA 152

Query: 150 T 150
           T
Sbjct: 153 T 153



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 292 PDPDIFIRTSGVARLSNFLLWQTSTCPLYAPKALWPEIGLRHLVWAVLNFQ 342
           P PD+ IRTSG  R+SNF LWQ +   L+    LWP+     L+ A+ ++Q
Sbjct: 193 PSPDLMIRTSGEQRISNFFLWQLAYTELFYSPVLWPDFDKDKLLEALASYQ 243