Miyakogusa Predicted Gene

Lj0g3v0314209.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0314209.3 tr|G5ASE5|G5ASE5_HETGA Nucleoporin GLE1
OS=Heterocephalus glaber GN=GW7_01915 PE=4 SV=1,30.34,3e-19,SUBFAMILY
NOT NAMED,NULL; GLE-1-RELATED,GLE1-like; GLE1,GLE1-like,CUFF.21213.3
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13120.1 | Symbols: emb1745 | embryo defective 1745 | chr1:44...   162   8e-41

>AT1G13120.1 | Symbols: emb1745 | embryo defective 1745 |
           chr1:4469334-4472775 REVERSE LENGTH=611
          Length = 611

 Score =  162 bits (411), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 122/183 (66%), Gaps = 25/183 (13%)

Query: 1   MDILLAELHRVCPYTVPKHMVYKKSTFHSREAYLKSIGYWEENGKMENTEDYLQRLESYV 60
           MDILLAE H+ C YTVPKH+V  +S + S                     D  +RL+S +
Sbjct: 427 MDILLAEFHKACIYTVPKHIVNSQSAWDS---------------------DAYERLDSIM 465

Query: 61  KMYAALVQTE--VPKVQNLHGLQHGWAWLSRFFNALSAHQYTAVSLDAFLRMAGFALFRR 118
           ++Y ALVQT+  V    N+HG++HGWAWL+RF N + A++ TA +L++FL+ AGF L +R
Sbjct: 466 RLYGALVQTDIRVGNATNVHGIEHGWAWLARFLNKIPANRATATALNSFLQTAGFGLHQR 525

Query: 119 YKSQFLKMLNVISENFLVDIKS-LNAPELRKTVAEIQTYIEDKMFLQEPEGRSLQ-TNLL 176
           YKSQFLK++NV+ E+FL  +++  +  +L   +AEI  Y++D+M+L+EPEGR+++ T+ L
Sbjct: 526 YKSQFLKVVNVVREHFLQKLRAKKDTSDLLVIIAEITAYLDDRMYLKEPEGRAMKTTSTL 585

Query: 177 SKE 179
           S E
Sbjct: 586 SSE 588