Miyakogusa Predicted Gene
- Lj0g3v0314179.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0314179.1 Non Chatacterized Hit- tr|I3SQ21|I3SQ21_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,38.2,0.00000002,
,CUFF.21207.1
(97 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22670.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 56 5e-09
AT5G56380.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 51 1e-07
AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 51 2e-07
AT1G51370.3 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 51 2e-07
AT1G51370.2 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 50 2e-07
AT5G25850.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 49 6e-07
AT5G38590.2 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 49 8e-07
AT5G38590.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 48 1e-06
AT5G53635.1 | Symbols: | F-box/RNI-like/FBD-like domains-contai... 47 2e-06
AT1G58310.1 | Symbols: | F-box/RNI-like superfamily protein | c... 47 3e-06
AT5G53640.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box doma... 45 7e-06
>AT5G22670.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:7538192-7539685
REVERSE LENGTH=443
Length = 443
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 1 MRGQVQNLDLLKIS----CKIPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSL 56
++ +VQ+LD+ + S IP S+++C TLV L+L V ++ V LP LKT+HL
Sbjct: 107 VKRKVQHLDIGRWSYLGQELIPHSLYTCETLVSLRLHNVSLPDFDHVSLPRLKTMHLIDN 166
Query: 57 SFPTLKYFIEVIYGCPILEDFKV 79
+P +I CP+LED V
Sbjct: 167 IYPNDALLENLISSCPVLEDLNV 189
>AT5G56380.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:22838836-22840353
REVERSE LENGTH=439
Length = 439
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 17 IPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSLSFPTLKYFIEVIYGCPILED 76
+P S+++C TLVVLKL+ Y V L SLKTL L +++ + ++ CP+LE+
Sbjct: 128 LPRSLYTCETLVVLKLKKGYLDVPDLVCLRSLKTLSLRDMNYSNASCLLRLLASCPVLEE 187
Query: 77 FKVKHVYYSRC 87
++ YY C
Sbjct: 188 LFIQQGYYDSC 198
>AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr1:19045615-19047141
FORWARD LENGTH=435
Length = 435
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 4 QVQNLDLLKISC----KIPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSLSFP 59
++Q+LD + C KIP SI++CTTLV L+L V LP LK +H ++S+P
Sbjct: 117 RIQHLD---VHCFHDNKIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFENVSYP 173
Query: 60 TLKYFIEVIYGCPILEDF 77
++I G P+LE+
Sbjct: 174 NETTLQKLISGSPVLEEL 191
>AT1G51370.3 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr1:19045615-19047141
FORWARD LENGTH=413
Length = 413
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 4 QVQNLDLLKISC----KIPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSLSFP 59
++Q+LD + C KIP SI++CTTLV L+L V LP LK +H ++S+P
Sbjct: 117 RIQHLD---VHCFHDNKIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFENVSYP 173
Query: 60 TLKYFIEVIYGCPILEDF 77
++I G P+LE+
Sbjct: 174 NETTLQKLISGSPVLEEL 191
>AT1G51370.2 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr1:19045615-19046748
FORWARD LENGTH=346
Length = 346
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 4 QVQNLDLLKISC----KIPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSLSFP 59
++Q+LD + C KIP SI++CTTLV L+L V LP LK +H ++S+P
Sbjct: 117 RIQHLD---VHCFHDNKIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFENVSYP 173
Query: 60 TLKYFIEVIYGCPILEDF 77
++I G P+LE+
Sbjct: 174 NETTLQKLISGSPVLEEL 191
>AT5G25850.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:9014082-9015917
FORWARD LENGTH=481
Length = 481
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 16 KIPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSLSFPTLKYFIEVIYGCPILE 75
++P S++ C TLV LKL + + V LP LK +HL + FP F ++ CP+LE
Sbjct: 133 ELPLSLYVCETLVSLKLFHLTLVDPEFVSLPCLKIMHLNYVWFPNDATFERLVSSCPVLE 192
Query: 76 DFKVKHVY 83
D K+ ++
Sbjct: 193 DLKIDVLW 200
>AT5G38590.2 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:15452066-15453455
REVERSE LENGTH=410
Length = 410
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 20 SIFSCTTLVVLKLEMVYFREY-SRVHLPSLKTLHLTSLSFPTLKYFIEVIYGCPILEDFK 78
S F+C +LV LKL V R+ S V LPSLKTL L ++SF K E++ CP+LED
Sbjct: 122 SFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVEGKSLQELLSICPVLEDLS 181
Query: 79 V 79
V
Sbjct: 182 V 182
>AT5G38590.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:15452586-15453455
REVERSE LENGTH=289
Length = 289
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 20 SIFSCTTLVVLKLEMVYFREY-SRVHLPSLKTLHLTSLSFPTLKYFIEVIYGCPILEDFK 78
S F+C +LV LKL V R+ S V LPSLKTL L ++SF K E++ CP+LED
Sbjct: 122 SFFACKSLVTLKLRSVTLRDIPSMVCLPSLKTLLLDNVSFVEGKSLQELLSICPVLEDLS 181
Query: 79 V 79
V
Sbjct: 182 V 182
>AT5G53635.1 | Symbols: | F-box/RNI-like/FBD-like
domains-containing protein | chr5:21785999-21787444
REVERSE LENGTH=426
Length = 426
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 16 KIPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSLSFPTLKYFIEVIYGCPILE 75
++P S++ C TLV LKL V + V LP LKT+HL + FP + CP+LE
Sbjct: 118 EMPLSLYICETLVYLKLCRVMLDDAEFVSLPCLKTIHLEYVWFPNEANLERFVSCCPVLE 177
Query: 76 DFKV 79
+ K+
Sbjct: 178 ELKI 181
>AT1G58310.1 | Symbols: | F-box/RNI-like superfamily protein |
chr1:21631947-21633642 FORWARD LENGTH=505
Length = 505
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 2 RGQVQNLDL---LKISCKIPFSIFSCTTLVVLKL--EMVYFREYSRVHLPSLKTLHLTSL 56
RG V +L+L LK +P IF TLV LKL E F + VHLP LKTLH+ S+
Sbjct: 129 RG-VSDLELDMHLKWKSSLPSKIFLSETLVRLKLSVERGPFIDVEDVHLPKLKTLHIVSV 187
Query: 57 SFPTLKYFI---EVIYGCPILEDFKVKHVYYSRCLF 89
F K+ I +++ GC ILE+ ++ Y S CL+
Sbjct: 188 KFE--KHGIGLNKLLSGCHILEELNLE--YISWCLW 219
>AT5G53640.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810), FBD
(InterPro:IPR013596), FBD-like (InterPro:IPR006566),
F-box domain, Skp2-like (InterPro:IPR022364),
Leucine-rich repeat 2 (InterPro:IPR013101); BEST
Arabidopsis thaliana protein match is:
F-box/RNI-like/FBD-like domains-containing protein
(TAIR:AT5G53635.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:21788311-21790690
REVERSE LENGTH=517
Length = 517
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 2 RGQVQNLDL--LKISCKIPFSIFSCTTLVVLKLEMVYFREYSRVHLPSLKTLHLTSLSFP 59
+ ++Q+LD+ L KI F+++ C LV L+L V + P +KT+HL +P
Sbjct: 119 KRKIQHLDVQFLPQFHKIHFNLYKCEALVSLRLFEVSLDKGRIFSFPCMKTMHLEDNVYP 178
Query: 60 TLKYFIEVIYGCPILEDFKVKHVYYSRCLFVLCG 93
F E+I CP+LED V R +F + G
Sbjct: 179 NEATFKELISCCPVLEDLTVIIYGMDRKVFQIEG 212