Miyakogusa Predicted Gene

Lj0g3v0313749.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0313749.1 Non Chatacterized Hit- tr|D8SFF1|D8SFF1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,41.91,2e-18,NAD(P)-binding Rossmann-fold domains,NULL; no
description,NAD(P)-binding domain,gene.g24450.t1.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49670.2 | Symbols: NQR | ARP protein (REF) | chr1:18381591-1...   153   6e-38
AT1G49670.1 | Symbols: NQR | ARP protein (REF) | chr1:18381591-1...   153   7e-38

>AT1G49670.2 | Symbols: NQR | ARP protein (REF) |
           chr1:18381591-18386021 REVERSE LENGTH=652
          Length = 652

 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 97/136 (71%), Gaps = 17/136 (12%)

Query: 41  KGLALALAEKGVFITIVDFSEERGREVATLVEKINSKFHSKLEHPSAIFVKCDVSNSSNF 100
           + L LALAEKGVF+T+ DFSEE+G+E  +LV + N+KFH  L  PSAIFVKCDV+N    
Sbjct: 20  RALCLALAEKGVFVTVADFSEEKGQETTSLVREANAKFHQGLSFPSAIFVKCDVTNR--- 76

Query: 101 IFAGVHCIDPESPTGDLAAAFEKHLLTYGGLDICINSAGIGNPIPFNKDQTDGTRSWRYT 160
                         GDL AAF+KHL T+G LDICIN+AGI  P+ F+KD TDG++SW++T
Sbjct: 77  --------------GDLLAAFDKHLATFGTLDICINNAGISTPLRFDKDDTDGSKSWKHT 122

Query: 161 VDVNFTAVIDCTRLAV 176
           ++V+  AV++ T+LA+
Sbjct: 123 INVDLIAVVEGTQLAI 138


>AT1G49670.1 | Symbols: NQR | ARP protein (REF) |
           chr1:18381591-18386021 REVERSE LENGTH=629
          Length = 629

 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 97/136 (71%), Gaps = 17/136 (12%)

Query: 41  KGLALALAEKGVFITIVDFSEERGREVATLVEKINSKFHSKLEHPSAIFVKCDVSNSSNF 100
           + L LALAEKGVF+T+ DFSEE+G+E  +LV + N+KFH  L  PSAIFVKCDV+N    
Sbjct: 20  RALCLALAEKGVFVTVADFSEEKGQETTSLVREANAKFHQGLSFPSAIFVKCDVTNR--- 76

Query: 101 IFAGVHCIDPESPTGDLAAAFEKHLLTYGGLDICINSAGIGNPIPFNKDQTDGTRSWRYT 160
                         GDL AAF+KHL T+G LDICIN+AGI  P+ F+KD TDG++SW++T
Sbjct: 77  --------------GDLLAAFDKHLATFGTLDICINNAGISTPLRFDKDDTDGSKSWKHT 122

Query: 161 VDVNFTAVIDCTRLAV 176
           ++V+  AV++ T+LA+
Sbjct: 123 INVDLIAVVEGTQLAI 138