Miyakogusa Predicted Gene

Lj0g3v0313489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0313489.1 tr|F1CZQ3|F1CZQ3_9LAMI Superoxide dismutase
OS=Haberlea rhodopensis GN=FSD PE=2
SV=1,54.05,0.00000000000002,seg,NULL; Fe,Mn superoxide dismutase
(SOD), C-terminal domain,Manganese/iron superoxide dismutase,
C,gene.g24438.t1.1
         (85 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25100.4 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    64   2e-11
AT4G25100.5 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    64   2e-11
AT4G25100.2 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    64   2e-11
AT4G25100.3 | Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:1...    64   2e-11
AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase 1 ...    64   2e-11
AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:2...    59   6e-10
AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7...    49   7e-07

>AT4G25100.4 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12885660 REVERSE LENGTH=186
          Length = 186

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIVA 52
           +HAYYLD+QNRRPD+I  F+  LVSW+ VS+RLE AKA  A
Sbjct: 146 EHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 186


>AT4G25100.5 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIVA 52
           +HAYYLD+QNRRPD+I  F+  LVSW+ VS+RLE AKA  A
Sbjct: 172 EHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212


>AT4G25100.2 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIVA 52
           +HAYYLD+QNRRPD+I  F+  LVSW+ VS+RLE AKA  A
Sbjct: 172 EHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212


>AT4G25100.3 | Symbols: FSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIVA 52
           +HAYYLD+QNRRPD+I  F+  LVSW+ VS+RLE AKA  A
Sbjct: 172 EHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212


>AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase 1 |
           chr4:12884649-12886501 REVERSE LENGTH=212
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIVA 52
           +HAYYLD+QNRRPD+I  F+  LVSW+ VS+RLE AKA  A
Sbjct: 172 EHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212


>AT5G51100.1 | Symbols: FSD2 | Fe superoxide dismutase 2 |
           chr5:20773357-20775635 REVERSE LENGTH=305
          Length = 305

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 34/38 (89%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKA 49
           +HAYYLD++NRR ++I+ F++KLVSW+TVS+RLE A A
Sbjct: 231 EHAYYLDFENRRAEYINTFMEKLVSWETVSTRLESAIA 268


>AT5G23310.1 | Symbols: FSD3 | Fe superoxide dismutase 3 |
           chr5:7850624-7852241 FORWARD LENGTH=263
          Length = 263

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 12  QHAYYLDYQNRRPDFISVFIDKLVSWDTVSSRLEQAKAIV 51
           +H+YYLDY+N R  +I+ F++ LVSW+   SR+ +A+A V
Sbjct: 214 EHSYYLDYKNDRAKYINTFLNHLVSWNAAMSRMARAEAFV 253