Miyakogusa Predicted Gene

Lj0g3v0313299.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0313299.2 Non Chatacterized Hit- tr|I1KD41|I1KD41_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,89.44,0,no
description,NULL; Helicase_C,Helicase, C-terminal; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NUL,CUFF.21152.2
         (540 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08110.1 | Symbols:  | nucleic acid binding;ATP-dependent hel...   707   0.0  
AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic...    62   1e-09
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic...    62   1e-09
AT1G27880.1 | Symbols:  | DEAD/DEAH box RNA helicase family prot...    55   1e-07

>AT5G08110.1 | Symbols:  | nucleic acid binding;ATP-dependent
            helicases;ATP binding;helicases;ATP-dependent helicases |
            chr5:2594854-2600114 REVERSE LENGTH=1141
          Length = 1141

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/543 (65%), Positives = 421/543 (77%), Gaps = 9/543 (1%)

Query: 1    MLHISILPHHR-QFSRVLSNLRFVVIDETHTYKGAFGSHTALILRRLRRLCSHVYGAVPS 59
            MLHISIL  H+ QFSR+LSNLR++VIDE H YKG FG H ALILRRLRRLCSHVYG  PS
Sbjct: 499  MLHISILRRHKEQFSRILSNLRYIVIDEAHIYKGPFGCHMALILRRLRRLCSHVYGVNPS 558

Query: 60   FVFSTATSANPLEHSMELANLPTLELFQNDGSPSARKLFILWNPILRPKDILKKAQFAIG 119
            F+F TATSANP EH MELANL  LEL   DGSPS+ KLF+LWNP   P    +K+   + 
Sbjct: 559  FIFCTATSANPREHCMELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVS 618

Query: 120  NNELADE----SANFVRSSPIVDVSRLFAEMVQHGLRCIAFCKSRKLCELVLCYTREILH 175
            ++E A +    +A    S P  +VS LFAEMVQHGLRCIAFC SRKLCELVLC TREIL 
Sbjct: 619  SSEAAADKPSGAAVDTLSGPASEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILA 678

Query: 176  DTAPHLVDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGF 235
            +TAPHLV++I +YRGGYIAE+RRKIES  FGGK+CG+AATNALELGIDVG IDVTLHLGF
Sbjct: 679  ETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIAATNALELGIDVGHIDVTLHLGF 738

Query: 236  PGSIASLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMKNPKKLFERPIECCHIDSRNKQV 295
            PGSIASLWQQAGR GRR +PSLAVYVAF GPLDQY+M  P KLF  PIECCHIDS+NK V
Sbjct: 739  PGSIASLWQQAGRSGRRQKPSLAVYVAFLGPLDQYYMSFPDKLFGSPIECCHIDSQNKHV 798

Query: 296  LEQHMACAALEHPLNVHYDEKYFGSCLESVLISLKARGYLRFDLSSVPSSRIWHYIGPEK 355
            L QH+ACAALEHPL++ YD+++FGS L   L  L+ +G+L FD S   SSRIW+YIG EK
Sbjct: 799  LMQHLACAALEHPLSLQYDQQHFGSGLSDPLAELRNKGFLSFDPSRDSSSRIWNYIGREK 858

Query: 356  SPSQAVNIRAIETVRYSVIDQKKNEVLEEVEESKAFFQVYEGAVYMCQGKTYLVEKLDLS 415
            +P++ V+IRAIETVRY V+++K  +VL+E+EESKAFF VYEGA+YM QG+ YLV  LD+ 
Sbjct: 859  NPARIVSIRAIETVRYRVMEKKSKDVLDEIEESKAFFHVYEGAIYMNQGRNYLVTSLDIK 918

Query: 416  NKTAFCKEADLKYYTKTRDYTDIHVIGGNIAYPVKVSTNMLPKTNARAHVCKVTTTWFGF 475
             K A C+  ++ YYT+TRDYTDI V GG+ AYPVK      P+T    H C+VTT WFGF
Sbjct: 919  EKVALCELVNVDYYTRTRDYTDIKVTGGDTAYPVKAPKKPTPQT----HACRVTTKWFGF 974

Query: 476  YRIWRGSNQIFDTVDLALPQYSYESQAVWIPVPQSIKEAVVKQNYDFRGGLHAASHAVLH 535
             RI R +N++ D V+L+LP Y+Y+SQAVWI VP S+K AV   N  FR GLHAA HA+++
Sbjct: 975  LRIRRRNNEVIDDVELSLPSYTYQSQAVWIQVPMSVKLAVETANLPFRAGLHAACHALVN 1034

Query: 536  VVP 538
            VVP
Sbjct: 1035 VVP 1037


>AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
           family protein  | chr4:16936788-16940172 FORWARD
           LENGTH=620
          Length = 620

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 34/198 (17%)

Query: 162 LCELVLCYTREILHDTAPHLVD---SICAYRGGYIAEERRKIESAFFGGKICGVAATNAL 218
           +C ++ C  R    D + HL     S  AY  G  ++ R  +   +   K   + AT A 
Sbjct: 164 ICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAF 223

Query: 219 ELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAV--YVAFGGPLDQYFMKN-- 274
            +GID  ++ +  H   P S+ S +Q++GR GR   PS +V  Y        +Y ++N  
Sbjct: 224 GMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSE 283

Query: 275 ---------PKKLFERPIECCHIDS-RNKQVLEQ----------HMACAALEHPLNVHYD 314
                    P   FE+ +  C     R K++LE              C A +HP  V + 
Sbjct: 284 NKKSSSSKKPTSDFEQIVTYCEGSGCRRKKILESFGEEFPVQQCKKTCDACKHPNQVAH- 342

Query: 315 EKYFGSCLESVLISLKAR 332
                 CLE ++ +   R
Sbjct: 343 ------CLEELMTTASRR 354


>AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
           family protein  | chr4:16936233-16940172 FORWARD
           LENGTH=713
          Length = 713

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 34/198 (17%)

Query: 162 LCELVLCYTREILHDTAPHLVD---SICAYRGGYIAEERRKIESAFFGGKICGVAATNAL 218
           +C ++ C  R    D + HL     S  AY  G  ++ R  +   +   K   + AT A 
Sbjct: 257 ICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAF 316

Query: 219 ELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAV--YVAFGGPLDQYFMKN-- 274
            +GID  ++ +  H   P S+ S +Q++GR GR   PS +V  Y        +Y ++N  
Sbjct: 317 GMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSE 376

Query: 275 ---------PKKLFERPIECCHIDS-RNKQVLEQ----------HMACAALEHPLNVHYD 314
                    P   FE+ +  C     R K++LE              C A +HP  V + 
Sbjct: 377 NKKSSSSKKPTSDFEQIVTYCEGSGCRRKKILESFGEEFPVQQCKKTCDACKHPNQVAH- 435

Query: 315 EKYFGSCLESVLISLKAR 332
                 CLE ++ +   R
Sbjct: 436 ------CLEELMTTASRR 447


>AT1G27880.1 | Symbols:  | DEAD/DEAH box RNA helicase family protein
            | chr1:9708940-9713901 FORWARD LENGTH=911
          Length = 911

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 154 IAFCKSRKLCELVLCYTREILHDTAPHLVDSICA--YRGGYIAEERRKIESAFFGGKICG 211
           I +CK +   +++  Y R+          ++I A  Y  G  A++R +I+ +F   KI  
Sbjct: 490 IVYCKFQYETDMISKYLRD----------NNINAKGYHSGLPAKDRVRIQESFCSNKIRV 539

Query: 212 VAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDR 254
           V AT A  +G+D G++   +H   PGS+    Q+ GR GR  R
Sbjct: 540 VVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGR 582