Miyakogusa Predicted Gene

Lj0g3v0313289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0313289.1 Non Chatacterized Hit- tr|F6GTE7|F6GTE7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,57.81,0.000000000000004, ,CUFF.21151.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08110.1 | Symbols:  | nucleic acid binding;ATP-dependent hel...    76   4e-15

>AT5G08110.1 | Symbols:  | nucleic acid binding;ATP-dependent
           helicases;ATP binding;helicases;ATP-dependent helicases
           | chr5:2594854-2600114 REVERSE LENGTH=1141
          Length = 1141

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 49/63 (77%)

Query: 16  TKSLLAVDMVEHLKKGIGSEGQIVYIEDICARKATFSEIPTELSEKMRSALKSIGISKLY 75
           T SLL  +MVEHL+ GIGS+GQ+V++E I ARK+ + E+  +LSE  +SALK IG++ LY
Sbjct: 336 TNSLLPSEMVEHLRNGIGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLY 395

Query: 76  SHQ 78
           SHQ
Sbjct: 396 SHQ 398