Miyakogusa Predicted Gene

Lj0g3v0312509.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0312509.3 Non Chatacterized Hit- tr|B9S6B4|B9S6B4_RICCO
Ring finger protein, putative OS=Ricinus communis GN=R,67.61,3e-19,
,CUFF.21126.3
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19910.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    87   2e-18
AT3G63530.2 | Symbols: BB, BB2 | RING/U-box superfamily protein ...    54   2e-08
AT3G63530.1 | Symbols: BB, BB2 | RING/U-box superfamily protein ...    54   2e-08

>AT3G19910.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:6926497-6929324 FORWARD LENGTH=340
          Length = 340

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 57/72 (79%)

Query: 1   MDEHVNNSQDAREDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTGSDQHG 60
           +++  + SQDA +++D DELSYE+LLALG++VG ES GL  DTIA  PS +YK G +Q+G
Sbjct: 224 LEDESHTSQDAWDEMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYKEGDNQNG 283

Query: 61  SNDSCVICRVGW 72
           +N+SCVICR+ +
Sbjct: 284 TNESCVICRLDY 295


>AT3G63530.2 | Symbols: BB, BB2 | RING/U-box superfamily protein |
           chr3:23456407-23457787 REVERSE LENGTH=248
          Length = 248

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 12  REDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTGS--DQHGSNDSCVICR 69
           ++D+D D ++YE+L+ LGE VG ES GL  + I   P+ KYK GS   +  + + CVIC+
Sbjct: 142 QDDIDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQ 201

Query: 70  VGWTM 74
           + + +
Sbjct: 202 LKYKI 206


>AT3G63530.1 | Symbols: BB, BB2 | RING/U-box superfamily protein |
           chr3:23456407-23457787 REVERSE LENGTH=248
          Length = 248

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 12  REDVDLDELSYEQLLALGEVVGIESIGLPTDTIAYFPSVKYKTGS--DQHGSNDSCVICR 69
           ++D+D D ++YE+L+ LGE VG ES GL  + I   P+ KYK GS   +  + + CVIC+
Sbjct: 142 QDDIDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQ 201

Query: 70  VGWTM 74
           + + +
Sbjct: 202 LKYKI 206