Miyakogusa Predicted Gene

Lj0g3v0312339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0312339.1 Non Chatacterized Hit- tr|I1LCF2|I1LCF2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.58357 PE,78.1,0,domain
in TBC and LysM domain containing pro,TLDc; seg,NULL; NUCLEOLAR
PROTEIN-RELATED,NULL; NUCLEOL,CUFF.21072.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05590.2 | Symbols:  | TLD-domain containing nucleolar protei...   241   4e-64
AT2G05590.1 | Symbols:  | TLD-domain containing nucleolar protei...   182   2e-46
AT4G39870.2 | Symbols:  | TLD-domain containing nucleolar protei...   172   2e-43
AT4G39870.1 | Symbols:  | TLD-domain containing nucleolar protei...   172   2e-43

>AT2G05590.2 | Symbols:  | TLD-domain containing nucleolar protein |
           chr2:2067196-2068951 FORWARD LENGTH=303
          Length = 303

 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 134/177 (75%)

Query: 129 KSQLNLSDDSAFISPELYEFFESCLPNIVKGRQWVLLYSSLKHGISLRTLIRKSAELSGP 188
           K    L++ S FI+  L+EF  + LPNIV+G +W+LLYS+LKHGISLRTL+R+S EL GP
Sbjct: 123 KKMRELTESSVFITANLFEFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGP 182

Query: 189 GLLIVGDRQGAVFGGLLDFPLKPTAKRKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMC 248
            LL+ GD+QGAVFG LL+ PL+PT KRKYQGT+Q+F+FTTIYG+PR+FRPTGANRYY MC
Sbjct: 183 CLLVAGDKQGAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMC 242

Query: 249 XXXXXXXXXXXXXXXXXDEDLLTGTSGPCDTFGNKCLAHSPEFELKNVELWGFTHAS 305
                            DEDLL  TSGP +TFGN+CLA S EFELKNVELWGF HAS
Sbjct: 243 MNEFLAFGGGGNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVELWGFAHAS 299


>AT2G05590.1 | Symbols:  | TLD-domain containing nucleolar protein |
           chr2:2067196-2068650 FORWARD LENGTH=263
          Length = 263

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 104/141 (73%)

Query: 129 KSQLNLSDDSAFISPELYEFFESCLPNIVKGRQWVLLYSSLKHGISLRTLIRKSAELSGP 188
           K    L++ S FI+  L+EF  + LPNIV+G +W+LLYS+LKHGISLRTL+R+S EL GP
Sbjct: 123 KKMRELTESSVFITANLFEFLHASLPNIVRGCKWILLYSTLKHGISLRTLLRRSGELPGP 182

Query: 189 GLLIVGDRQGAVFGGLLDFPLKPTAKRKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMC 248
            LL+ GD+QGAVFG LL+ PL+PT KRKYQGT+Q+F+FTTIYG+PR+FRPTGANRYY MC
Sbjct: 183 CLLVAGDKQGAVFGALLECPLQPTPKRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMC 242

Query: 249 XXXXXXXXXXXXXXXXXDEDL 269
                            DEDL
Sbjct: 243 MNEFLAFGGGGNFALCLDEDL 263


>AT4G39870.2 | Symbols:  | TLD-domain containing nucleolar protein |
           chr4:18502234-18504275 FORWARD LENGTH=394
          Length = 394

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 134 LSDDSAFISPELYEFFESCLPNIVKGRQWVLLYSSLKHGISLRTLIRKSAELSGPGLLIV 193
           +S+ S  +S +      + LP +V+GR+W+LLYS+ +HGISL TL RKS    G  LL+V
Sbjct: 204 ISEPSLLLSEQSRRSLYTSLPALVQGRKWILLYSTWRHGISLSTLYRKSLLWPGLSLLVV 263

Query: 194 GDRQGAVFGGLLDFPLKPTAKRKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMCXXXXX 253
           GDR+G+VFGGL++ PL PT K KYQGTN +FVFT   GQP ++RPTGANR+Y +C     
Sbjct: 264 GDRKGSVFGGLVEAPLIPTDK-KYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSKEFL 322

Query: 254 XXXXXXXXXXXXDEDLLTGTSGPCDTFGNKCLAHSPEFELKNVELWGFTHAS 305
                       D +LL+G+S   +T+GN CLA S +F++K VELWGF + S
Sbjct: 323 ALGGGGRFALYLDSELLSGSSAYSETYGNSCLADSQDFDVKEVELWGFVYGS 374


>AT4G39870.1 | Symbols:  | TLD-domain containing nucleolar protein |
           chr4:18502234-18504275 FORWARD LENGTH=394
          Length = 394

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 134 LSDDSAFISPELYEFFESCLPNIVKGRQWVLLYSSLKHGISLRTLIRKSAELSGPGLLIV 193
           +S+ S  +S +      + LP +V+GR+W+LLYS+ +HGISL TL RKS    G  LL+V
Sbjct: 204 ISEPSLLLSEQSRRSLYTSLPALVQGRKWILLYSTWRHGISLSTLYRKSLLWPGLSLLVV 263

Query: 194 GDRQGAVFGGLLDFPLKPTAKRKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMCXXXXX 253
           GDR+G+VFGGL++ PL PT K KYQGTN +FVFT   GQP ++RPTGANR+Y +C     
Sbjct: 264 GDRKGSVFGGLVEAPLIPTDK-KYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSKEFL 322

Query: 254 XXXXXXXXXXXXDEDLLTGTSGPCDTFGNKCLAHSPEFELKNVELWGFTHAS 305
                       D +LL+G+S   +T+GN CLA S +F++K VELWGF + S
Sbjct: 323 ALGGGGRFALYLDSELLSGSSAYSETYGNSCLADSQDFDVKEVELWGFVYGS 374