Miyakogusa Predicted Gene

Lj0g3v0312309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0312309.1 Non Chatacterized Hit- tr|I3SYW4|I3SYW4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,NULL; Ribosomal proteins L15p and L18e,Ribosomal protein
L18e/L15P; Ribosomal_L18e,Ri,
NODE_34570_length_688_cov_235.547958.path1.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27850.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily...   325   1e-89
AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 | chr3:1621...   325   1e-89
AT2G47570.2 | Symbols:  | Ribosomal protein L18e/L15 superfamily...   219   7e-58
AT2G47570.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily...   219   7e-58

>AT5G27850.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily
           protein | chr5:9873169-9874297 FORWARD LENGTH=187
          Length = 187

 Score =  325 bits (833), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/187 (83%), Positives = 174/187 (93%)

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKA 60
           MGIDL AGGKSKKTKRTAPKS+D+YLKLLVKLYRFLVRR+ SNFN+VILKRLFMSKVNKA
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLIRYTKGKEGKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRL+ +  GK+ KIAV+VG +TDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALIAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRKFEKARGKR 180
           TFDQLAL APLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR  GRKFEKARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSKGFRV 187
            S+GF+V
Sbjct: 181 KSRGFKV 187


>AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 |
           chr3:1621511-1622775 FORWARD LENGTH=187
          Length = 187

 Score =  325 bits (832), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/187 (83%), Positives = 172/187 (91%)

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKA 60
           MGIDL AGGKSKKTKRTAPKS+D+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNKA
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PLSLSRLIRYTKGKEGKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120
           PLSLSRL+ +  GKE KIAV+VG +TDD+RV+E+PA+KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALIAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRKFEKARGKR 180
           TFDQLAL APLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+ GRKFEKARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSKGFRV 187
            S+GF+V
Sbjct: 181 KSRGFKV 187


>AT2G47570.2 | Symbols:  | Ribosomal protein L18e/L15 superfamily
           protein | chr2:19515898-19516717 REVERSE LENGTH=135
          Length = 135

 Score =  219 bits (559), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 117/135 (86%), Gaps = 1/135 (0%)

Query: 54  MSKVNKAPLSLSRLIRYTKGKEGKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIE 113
           MSKVNKAPLSLSRL+RY  GK+GKIAV+VG VTDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALIAP-LGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRK 172
           KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 173 FEKARGKRNSKGFRV 187
            E ARG+R S+GF+V
Sbjct: 121 IEIARGRRRSRGFKV 135


>AT2G47570.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily
           protein | chr2:19515898-19516717 REVERSE LENGTH=135
          Length = 135

 Score =  219 bits (559), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 117/135 (86%), Gaps = 1/135 (0%)

Query: 54  MSKVNKAPLSLSRLIRYTKGKEGKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIE 113
           MSKVNKAPLSLSRL+RY  GK+GKIAV+VG VTDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALIAP-LGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSNGRK 172
           KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 173 FEKARGKRNSKGFRV 187
            E ARG+R S+GF+V
Sbjct: 121 IEIARGRRRSRGFKV 135