Miyakogusa Predicted Gene
- Lj0g3v0312029.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0312029.1 Non Chatacterized Hit- tr|I1MI74|I1MI74_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57825
PE,87.18,0,seg,NULL; Pro_isomerase,Cyclophilin-like peptidyl-prolyl
cis-trans isomerase domain; RRM_1,RNA recog,CUFF.21055.1
(237 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 353 4e-98
AT1G53780.1 | Symbols: | peptidyl-prolyl cis-trans isomerases;h... 120 1e-27
AT1G53780.3 | Symbols: | peptidyl-prolyl cis-trans isomerases;h... 120 1e-27
AT1G53780.2 | Symbols: | peptidyl-prolyl cis-trans isomerases;h... 120 1e-27
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 1e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 1e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 57 1e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 1e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 1e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 5e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 5e-08
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 54 8e-08
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 54 1e-07
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 54 1e-07
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 53 2e-07
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 53 2e-07
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 53 2e-07
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 53 2e-07
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 52 3e-07
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 52 3e-07
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 52 4e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 51 5e-07
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 51 6e-07
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 51 6e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 50 9e-07
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 48 6e-06
AT2G36130.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-t... 48 6e-06
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 353 bits (907), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/237 (72%), Positives = 191/237 (80%)
Query: 1 MASAGQNLNASQFYITLRDDLDYLDGKHTXXXXXXXXXXXLTRINEAYVDEKSRPYKNIR 60
MAS G+NLNASQFY TLRDDLDYLDGKHT LTRINEAYVD K+RPYKNIR
Sbjct: 96 MASGGENLNASQFYFTLRDDLDYLDGKHTVFGQIAEGFDTLTRINEAYVDPKNRPYKNIR 155
Query: 61 IMHTYILDDPFVDPPELTEFIPDASPEGKCKXXXXXXXXXXXXXXPMDEQLNPAELEEVI 120
I HT+ILDDPF DPP+L E +PDASPEGK K PMDE+L ELEEVI
Sbjct: 156 IKHTHILDDPFDDPPQLAEMMPDASPEGKPKEEVKDDVRLEDDWVPMDEELGAQELEEVI 215
Query: 121 KTKEAHSRAVVLESIGDIPDADIKPPDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEII 180
+ K AHS AVVLESIGDIP+A++KPPDNVLF+CKLNPVTED DLHTIFS+FGTV SA++I
Sbjct: 216 REKAAHSSAVVLESIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVI 275
Query: 181 RDQKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVSKEWPKYIPK 237
RD KTGDSLCYAFIEFE+K++CEQAYFKMDNALIDDRRIHVDFSQSVSK W ++ K
Sbjct: 276 RDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQFRQK 332
>AT1G53780.1 | Symbols: | peptidyl-prolyl cis-trans
isomerases;hydrolases;nucleoside-triphosphatases;ATP
binding;nucleotide binding;ATPases |
chr1:20074212-20077235 REVERSE LENGTH=598
Length = 598
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 104/205 (50%), Gaps = 20/205 (9%)
Query: 1 MASAGQNLNASQFYITLRDDLDYLDGKHTXXXXXXXXXXXLTRINEAYVDEKSRPYKNIR 60
MAS G+NLNASQFYITL DDLD LDGK+T LT I +A VD K+RP K+IR
Sbjct: 1 MASFGENLNASQFYITLCDDLDCLDGKYTVFGKITSGFETLTCIAKASVDAKNRPNKDIR 60
Query: 61 IMHTYILDDPFVDPPELTEFIPDASPEGKCKXXXXXXXXXXXXXXPMDEQLNPAELEEVI 120
I HTYIL DPF DPP+L + IPDASP+GK K D + + EL E
Sbjct: 61 IRHTYILTDPFDDPPQLAKMIPDASPKGKPKVEVTDDMQPREDWDIRDAEFDFLELNEAF 120
Query: 121 KTKEAHSRAVVLESIGDIPDADIKPPDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEII 180
A+ V + N + I + E+ H + S F + S +
Sbjct: 121 AEMAANPVEVAI---------------NSMIIRDIMEDPENEGPHNMRSDFEPLLSVLRL 165
Query: 181 RDQKTGDSLCYAFIEFEDKQACEQA 205
RD +TGD IEF+ +A E+A
Sbjct: 166 RDYETGD-----IIEFDSTEASEEA 185
>AT1G53780.3 | Symbols: | peptidyl-prolyl cis-trans
isomerases;hydrolases;nucleoside-triphosphatases;ATP
binding;nucleotide binding;ATPases |
chr1:20074212-20077235 REVERSE LENGTH=599
Length = 599
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 104/205 (50%), Gaps = 20/205 (9%)
Query: 1 MASAGQNLNASQFYITLRDDLDYLDGKHTXXXXXXXXXXXLTRINEAYVDEKSRPYKNIR 60
MAS G+NLNASQFYITL DDLD LDGK+T LT I +A VD K+RP K+IR
Sbjct: 1 MASFGENLNASQFYITLCDDLDCLDGKYTVFGKITSGFETLTCIAKASVDAKNRPNKDIR 60
Query: 61 IMHTYILDDPFVDPPELTEFIPDASPEGKCKXXXXXXXXXXXXXXPMDEQLNPAELEEVI 120
I HTYIL DPF DPP+L + IPDASP+GK K D + + EL E
Sbjct: 61 IRHTYILTDPFDDPPQLAKMIPDASPKGKPKVEVTDDMQPREDWDIRDAEFDFLELNEAF 120
Query: 121 KTKEAHSRAVVLESIGDIPDADIKPPDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEII 180
A+ V + N + I + E+ H + S F + S +
Sbjct: 121 AEMAANPVEVAI---------------NSMIIRDIMEDPENEGPHNMRSDFEPLLSVLRL 165
Query: 181 RDQKTGDSLCYAFIEFEDKQACEQA 205
RD +TGD IEF+ +A E+A
Sbjct: 166 RDYETGD-----IIEFDSTEASEEA 185
>AT1G53780.2 | Symbols: | peptidyl-prolyl cis-trans
isomerases;hydrolases;nucleoside-triphosphatases;ATP
binding;nucleotide binding;ATPases |
chr1:20074212-20077713 REVERSE LENGTH=620
Length = 620
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 104/205 (50%), Gaps = 20/205 (9%)
Query: 1 MASAGQNLNASQFYITLRDDLDYLDGKHTXXXXXXXXXXXLTRINEAYVDEKSRPYKNIR 60
MAS G+NLNASQFYITL DDLD LDGK+T LT I +A VD K+RP K+IR
Sbjct: 22 MASFGENLNASQFYITLCDDLDCLDGKYTVFGKITSGFETLTCIAKASVDAKNRPNKDIR 81
Query: 61 IMHTYILDDPFVDPPELTEFIPDASPEGKCKXXXXXXXXXXXXXXPMDEQLNPAELEEVI 120
I HTYIL DPF DPP+L + IPDASP+GK K D + + EL E
Sbjct: 82 IRHTYILTDPFDDPPQLAKMIPDASPKGKPKVEVTDDMQPREDWDIRDAEFDFLELNEAF 141
Query: 121 KTKEAHSRAVVLESIGDIPDADIKPPDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEII 180
A+ V + N + I + E+ H + S F + S +
Sbjct: 142 AEMAANPVEVAI---------------NSMIIRDIMEDPENEGPHNMRSDFEPLLSVLRL 186
Query: 181 RDQKTGDSLCYAFIEFEDKQACEQA 205
RD +TGD IEF+ +A E+A
Sbjct: 187 RDYETGD-----IIEFDSTEASEEA 206
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
LFI L+ T+DA L F+ FG V A++I D++TG S + F+ F D+ A A +M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 210 DNALIDDRRIHVD 222
D ++ R I V+
Sbjct: 97 DGKELNGRHIRVN 109
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
LFI L+ T+DA L F+ FG V A++I D++TG S + F+ F D+ A A +M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 210 DNALIDDRRIHVD 222
D ++ R I V+
Sbjct: 97 DGKELNGRHIRVN 109
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
LFI L+ T+DA L F+ FG V A++I D++TG S + F+ F D+ A A +M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 210 DNALIDDRRIHVD 222
D ++ R I V+
Sbjct: 97 DGKELNGRHIRVN 109
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 151 FICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMD 210
F+ L T D DL FSQFG V ++II D+++G S + F+ F+D++A A +M+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 211 NALIDDRRIHVDFSQS 226
+D R I V+ +QS
Sbjct: 69 GKELDGRVITVNEAQS 84
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
LFI L+ T+DA L F+ FG V A++I D++TG S + F+ F D+ A A +M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 210 DNALIDDRRIHVD 222
D ++ R I V+
Sbjct: 97 DGKELNGRHIRVN 109
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
+F+ L+P DA L+ FS F + S A ++ DQKTG S + F+ F ++Q + A +M
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 210 DNALIDDRRIHVDFS 224
+ + R+I +++
Sbjct: 206 NGKWLSSRQIRCNWA 220
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 139 PDADIKP---PDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIE 195
P D K P LF+ +L+ T + L + S++G + + ++R TG S Y F+E
Sbjct: 52 PSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVE 111
Query: 196 FEDKQACEQAYFKMDNALIDDRRIHVDFSQSVSKEWPKYIP 236
+E ++ +AY ++LID R I VD+++ + P +IP
Sbjct: 112 YETEKEMLRAYEDAHHSLIDGREIIVDYNR--QQLMPGWIP 150
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 151 FICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMD 210
F+ L T D DL FSQFG V ++II D+++G S + F+ F+D++A A +M+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 211 NALIDDRRIHVDFSQ 225
+D R I V+ +Q
Sbjct: 69 GKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 151 FICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMD 210
F+ L T D DL FSQFG V ++II D+++G S + F+ F+D++A A +M+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 211 NALIDDRRIHVDFSQ 225
+D R I V+ +Q
Sbjct: 69 GKELDGRVITVNEAQ 83
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
+F+ L+P DA L FS F + S A ++ DQKTG S + F+ F ++Q + A +M
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 210 DNALIDDRRIHVDFS 224
+ + R+I +++
Sbjct: 210 NGKWVSSRQIRCNWA 224
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
L + + T DL+ +F+++G V I RD++TGDS +AF+ ++ K +A ++
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 210 DNALIDDRRIHVDFSQ 225
D ++D R I V F++
Sbjct: 78 DGRVVDGREITVQFAK 93
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
L + + T DL+ +F+++G V I RD++TGDS +AF+ ++ K +A ++
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 210 DNALIDDRRIHVDFSQ 225
D ++D R I V F++
Sbjct: 78 DGRVVDGREITVQFAK 93
>AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323700-1325486 FORWARD LENGTH=222
Length = 222
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 149 VLFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFK 208
VL+I ++ + ++ FSQFGTV + R++KTG S + FI+FED + E A
Sbjct: 61 VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120
Query: 209 MDNALIDDR--RIHV 221
M++ L+ + ++HV
Sbjct: 121 MNDYLLMEHMLKVHV 135
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 151 FICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMD 210
F+ L T+D L T F+Q+G V ++II D++TG S + F+ F+D++A + A M+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 211 NALIDDRRIHVDFSQ 225
+D R I V+ +Q
Sbjct: 71 GQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 151 FICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMD 210
F+ L T+D L T F+Q+G V ++II D++TG S + F+ F+D++A + A M+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 211 NALIDDRRIHVDFSQ 225
+D R I V+ +Q
Sbjct: 71 GQDLDGRSITVNEAQ 85
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
+++ L+ T D +L T F Q+G++SSA ++RD G S C+ F+ FE+ + +A +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 210 DNALIDDRRIHVDFSQSVSKE 230
+ DD+ +V +Q S+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSER 306
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
+++ L DADL +F +FG ++SA +++D + G S + F+ FE +A A KM
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 210 DNALIDDRRIHVDFSQ 225
+ ++D++ +HV +Q
Sbjct: 180 NGVVVDEKELHVGRAQ 195
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
LF+ L+ T+D+ L F+ FG V+ A +I D++TG S + F+ F + + A +M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 210 DNALIDDRRIHVDFS 224
D ++ R+I V+ +
Sbjct: 97 DGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
LF+ L+ T+D+ L F+ FG V+ A +I D++TG S + F+ F + + A +M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 210 DNALIDDRRIHVDFS 224
D ++ R+I V+ +
Sbjct: 97 DGKELNGRQIRVNLA 111
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 145 PPDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQ 204
P L++ L+P + L+ F++F +++S + +D +G SLCY + F +Q
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 205 AYFKMDNALIDDRRIHVDFS 224
A K +N+L++ + I V +S
Sbjct: 81 AIEKKNNSLLNGKMIRVMWS 100
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
LF+ +L+ T D L +FS FG + A +IRD +T + FI F+ + +A +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 210 DNALIDDRRIHVDFSQSV 227
D ++D R I V+ +++
Sbjct: 69 DGKIVDGRLIFVEVAKNA 86
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
+F+ L+P DA L T FS + T S A ++ DQKTG S + F+ F ++Q + A ++
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 210 DNALIDDRRIHVDFS 224
+ R+I +++
Sbjct: 201 TGKWLGSRQIRCNWA 215
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
+F+ L+P DA L T FS + T S A ++ DQKTG S + F+ F ++Q + A ++
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 210 DNALIDDRRIHVDFS 224
+ R+I +++
Sbjct: 201 TGKWLGSRQIRCNWA 215
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 146 PDNVLFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQA 205
P LF+ +LN + ++ + F +G + ++ DQ T YAFIE+ + + A
Sbjct: 136 PYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAA 195
Query: 206 YFKMDNALIDDRRIHVDFSQSVSKEWPKYIPK 237
Y + D ID RR+ VD + + P + P+
Sbjct: 196 YKQADGQKIDGRRVLVDVERGRT--VPNWRPR 225
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 146 PDNVLFICKLNPVTEDADLHTIFS-QFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQ 204
PD +F+ L+P D LH FS ++ +V SA+++ D TG S Y F+ F D+ +
Sbjct: 200 PDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSR 259
Query: 205 AYFKMDNALIDDRRIHVDFS 224
A +M+ A +R++ V +
Sbjct: 260 ALTEMNGAYCSNRQMRVGIA 279
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 150 LFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKM 209
+F+ L+P D DL FS+FG + +I+ ++ TG S + FI F D++A +++ +M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 210 DNALIDDRRIHVD 222
DR I V+
Sbjct: 69 HGRDFGDRVISVN 81
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%)
Query: 148 NVLFICKLNPVTEDADLHTIFSQFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYF 207
+ L++ L+ ++D+HT+FS FG V+ +++D+ T S AF+ + ++ +A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 208 KMDNALIDDRRIHVDFS 224
MD +++ R++ V +
Sbjct: 117 SMDAKILNGRKLTVSIA 133
>AT2G36130.1 | Symbols: | Cyclophilin-like peptidyl-prolyl
cis-trans isomerase family protein |
chr2:15166863-15168259 FORWARD LENGTH=164
Length = 164
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1 MASAGQNLNASQFYITLRDDLDYLDGKHTXXXXXXXXXXXLTRINEAYVDEKSRPYKNIR 60
MA+AG N N SQF+ITL LDGKHT + R+ D RP ++
Sbjct: 98 MANAGPNTNGSQFFITLAPQPS-LDGKHTIFGRVCRGMEVIKRLGSVQTDNTDRPIHEVK 156
Query: 61 IMHTYILD 68
I+ T ++D
Sbjct: 157 ILRTKVID 164