Miyakogusa Predicted Gene

Lj0g3v0311659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311659.1 Non Chatacterized Hit- tr|I1N4P9|I1N4P9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.58416
PE,50,7e-19,B12D,NADH-ubiquinone reductase complex 1 MLRQ
subunit,NODE_69686_length_624_cov_152.589737.path1.1
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48140.1 | Symbols:  | B12D protein | chr3:17778471-17779299 ...   134   2e-32
AT3G29970.1 | Symbols:  | B12D protein | chr3:11745299-11746481 ...    97   2e-21

>AT3G48140.1 | Symbols:  | B12D protein | chr3:17778471-17779299
          FORWARD LENGTH=88
          Length = 88

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 71/85 (83%)

Query: 3  ANRWIRPEVFPLFATVGIAVGICGMQLVRNISTNPEVRVTKQNRAAGILDNFEEGEKYSQ 62
          A+RW+RPEV+PLFA  G+AVGIC   L+RNI+ NPEVR TK+NRAAGILDN  EGEKY +
Sbjct: 2  ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKE 61

Query: 63 HFVRKFVRGKDTQIMPSINKFFSDP 87
          +F+RKFVR K  +IMP +NKFF+DP
Sbjct: 62 NFLRKFVRNKKPEIMPGLNKFFTDP 86


>AT3G29970.1 | Symbols:  | B12D protein | chr3:11745299-11746481
          FORWARD LENGTH=87
          Length = 87

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 57/81 (70%)

Query: 5  RWIRPEVFPLFATVGIAVGICGMQLVRNISTNPEVRVTKQNRAAGILDNFEEGEKYSQHF 64
          RW+RPEV+PL   +G    +   QL RN   NP+ R+ K++R  GIL+N +EGEKY+QH 
Sbjct: 3  RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query: 65 VRKFVRGKDTQIMPSINKFFS 85
           RK++R +  Q+MPS+N+FFS
Sbjct: 63 FRKYLRTRQPQVMPSLNRFFS 83