Miyakogusa Predicted Gene

Lj0g3v0311329.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311329.1 Non Chatacterized Hit- tr|F6HVK5|F6HVK5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,83.1,3e-19,no
description,Pre-ATP-grasp fold; PHOSPHORIBOSYLAMINOIMIDAZOLE
CARBOXYLASE ATPASE-SUBUNIT,NULL; Pre,gene.g24274.t1.1
         (117 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37690.1 | Symbols:  | phosphoribosylaminoimidazole carboxyla...    91   1e-19

>AT2G37690.1 | Symbols:  | phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative |
           chr2:15806111-15810240 FORWARD LENGTH=642
          Length = 642

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 50/67 (74%)

Query: 50  VHGLSEAXXXXXXXXXXXRMLCQAASKMAIKVMVLDPQENCPASSLSYQHRVGSFDDSAT 109
           VHG+SE            RMLCQAAS++AIKVM+LDP +NC AS+LSY H V SFDDSAT
Sbjct: 85  VHGVSEKIVGVLGGGQLGRMLCQAASQLAIKVMILDPSKNCSASALSYGHMVDSFDDSAT 144

Query: 110 VEEFAKR 116
           VEEFAKR
Sbjct: 145 VEEFAKR 151