Miyakogusa Predicted Gene

Lj0g3v0311209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311209.1 Non Chatacterized Hit- tr|C5WXV1|C5WXV1_SORBI
Putative uncharacterized protein Sb01g046810
OS=Sorghu,58.43,1e-18,E2F-DP heterodimerization region,NULL;
DP,Transcription factor DP, C-terminal,CUFF.21000.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03415.2 | Symbols: DPB | Transcription factor DP | chr5:8428...    63   4e-11
AT5G03415.1 | Symbols: DPB, ATDPB | Transcription factor DP | ch...    63   4e-11
AT5G02470.3 | Symbols: DPA | Transcription factor DP | chr5:5425...    50   3e-07
AT5G02470.2 | Symbols: DPA | Transcription factor DP | chr5:5425...    50   3e-07
AT5G02470.1 | Symbols: DPA | Transcription factor DP | chr5:5425...    50   3e-07

>AT5G03415.2 | Symbols: DPB | Transcription factor DP |
           chr5:842842-845200 FORWARD LENGTH=379
          Length = 379

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 29/31 (93%)

Query: 1   MQLVHFDFNSTPFELHDDNYVLKAMKFHERP 31
           MQLVHFDFNSTPFELHDDN+VLK MKF ++P
Sbjct: 260 MQLVHFDFNSTPFELHDDNFVLKTMKFCDQP 290


>AT5G03415.1 | Symbols: DPB, ATDPB | Transcription factor DP |
           chr5:842842-845200 FORWARD LENGTH=385
          Length = 385

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 29/31 (93%)

Query: 1   MQLVHFDFNSTPFELHDDNYVLKAMKFHERP 31
           MQLVHFDFNSTPFELHDDN+VLK MKF ++P
Sbjct: 266 MQLVHFDFNSTPFELHDDNFVLKTMKFCDQP 296


>AT5G02470.3 | Symbols: DPA | Transcription factor DP |
           chr5:542562-544423 REVERSE LENGTH=292
          Length = 292

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 1   MQLVHFDFNSTPFELHDDNYVLKAMKFHERPEN 33
           MQLVH DFNSTPF +HDD Y+LK M+  ++ +N
Sbjct: 217 MQLVHLDFNSTPFSVHDDAYILKLMQEQKQEQN 249


>AT5G02470.2 | Symbols: DPA | Transcription factor DP |
           chr5:542562-544423 REVERSE LENGTH=292
          Length = 292

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 1   MQLVHFDFNSTPFELHDDNYVLKAMKFHERPEN 33
           MQLVH DFNSTPF +HDD Y+LK M+  ++ +N
Sbjct: 217 MQLVHLDFNSTPFSVHDDAYILKLMQEQKQEQN 249


>AT5G02470.1 | Symbols: DPA | Transcription factor DP |
           chr5:542562-544423 REVERSE LENGTH=292
          Length = 292

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 1   MQLVHFDFNSTPFELHDDNYVLKAMKFHERPEN 33
           MQLVH DFNSTPF +HDD Y+LK M+  ++ +N
Sbjct: 217 MQLVHLDFNSTPFSVHDDAYILKLMQEQKQEQN 249