Miyakogusa Predicted Gene

Lj0g3v0311169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311169.1 Non Chatacterized Hit- tr|B9SBE6|B9SBE6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,65.22,2e-16,seg,NULL,CUFF.20994.1
         (97 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10810.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    50   3e-07
AT4G24026.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    48   2e-06

>AT4G10810.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: chloroplast;
          EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
          growth stages; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast
          hits to 1807 proteins in 277 species: Archae - 0;
          Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
          Viruses - 0; Other Eukaryotes - 339 (source: NCBI
          BLink). | chr4:6645986-6646231 REVERSE LENGTH=81
          Length = 81

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 19 SIMSCDKLDRMANWVGANMASAFFASLERCSCINL 53
          S  S +KLD+ A+WV   + SAFFASLERCSC+NL
Sbjct: 18 STASLEKLDQAASWVSTTVISAFFASLERCSCVNL 52


>AT4G24026.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G10810.1);
          Has 30201 Blast hits to 17322 proteins in 780 species:
          Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
          3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
          2996 (source: NCBI BLink). | chr4:12486415-12486651
          FORWARD LENGTH=78
          Length = 78

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 18 GSIMSCDKLDRMANWVGANMASAFFASLERCSCINL 53
           +  S +K+D  A+W+ A + SAFF SLERC+C+NL
Sbjct: 12 STTTSMEKIDHAASWISATVISAFFTSLERCACVNL 47