Miyakogusa Predicted Gene

Lj0g3v0311009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311009.1 tr|B9HB15|B9HB15_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_762913 PE=4
SV=1,45.69,4e-17,UCH,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2; Cysteine proteinases,NULL; seg,NULL,CUFF.21004.1
         (471 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23 | ...    80   3e-15

>AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23 |
           chr5:23470218-23473997 REVERSE LENGTH=859
          Length = 859

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 6/78 (7%)

Query: 1   MWYTLDDNRVNHVSEREVLNQQAYMLFYVRDRKSIVPRKPVDIAKKENINT------IVN 54
           MWY+LDDNRV  VSE+ V NQ+AYMLFYVRDR++ VP+  V + KKE+  T      + +
Sbjct: 380 MWYSLDDNRVVQVSEKTVFNQKAYMLFYVRDRQNAVPKNSVPVVKKESFATNRASLIVAS 439

Query: 55  GIRDSSTSNHVLKEYPNG 72
            I+D    + V+KE   G
Sbjct: 440 NIKDQVNGSTVIKECGFG 457



 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 374 MHNSLMSMLTRGLEETVVARWDDIEIASSRALETKSSEKVKDIGYVGDEWDEELDKGKRK 433
           +    +++LTRG+ ETVVA+WD+ EI++S+   +KS E    IGYV DEWDEE D+GK+K
Sbjct: 759 LQKEAVNILTRGVPETVVAKWDE-EISASQKRGSKS-EGASSIGYVADEWDEEYDRGKKK 816

Query: 434 KLRTFKHNFDGPNIFQEIATEKFKSKRAK 462
           K+R  + ++ GPN FQ +A+++ K  + K
Sbjct: 817 KIRIKEESYRGPNPFQMLASKRQKETKKK 845