Miyakogusa Predicted Gene

Lj0g3v0310909.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0310909.1 Non Chatacterized Hit- tr|I3T002|I3T002_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.07,0,Vac_ImportDeg,Vacuolar import/degradation protein Vid24;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,,CUFF.20975.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37680.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Vacuolar i...   362   e-100

>AT2G37680.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Vacuolar
           import/degradation protein Vid24 (InterPro:IPR018618);
           Has 318 Blast hits to 317 proteins in 131 species:
           Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184;
           Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source:
           NCBI BLink). | chr2:15803500-15805515 REVERSE LENGTH=215
          Length = 215

 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 187/215 (86%)

Query: 1   MPVRVLENVAVSQTVLGPNARRGSFQSCSLLRVGQAFSGTQNVSSLQKDEAWRVNVRIQG 60
           MPVRV+E+   +Q        R      SLL  GQAFSGTQNVS+ QK+EAWRVNV+IQG
Sbjct: 1   MPVRVVESNTPAQVSGTDPGNRSPLPPSSLLGAGQAFSGTQNVSNQQKEEAWRVNVQIQG 60

Query: 61  CDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDIKNYTFFTGKWEAAPEDDIRHWTKFP 120
            DLEHGYLCGTMEALNVPMADTPV+TFWEGEIVD KNYTF+TGKWEA  EDD+RHW+KFP
Sbjct: 61  IDLEHGYLCGTMEALNVPMADTPVITFWEGEIVDGKNYTFYTGKWEATREDDMRHWSKFP 120

Query: 121 SFSPILGQVELDGGKNLDLSNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSI 180
           SFSP+ GQVE DGG+ LDL+NYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSI
Sbjct: 121 SFSPLQGQVESDGGRQLDLNNYPYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSI 180

Query: 181 SGFYYDPNSSPFQKLELKSTNDGRSGFSFSSYELQ 215
           SGFYYDPNSSPFQKLELK+ N+GRSGFSFSSYELQ
Sbjct: 181 SGFYYDPNSSPFQKLELKTVNEGRSGFSFSSYELQ 215