Miyakogusa Predicted Gene

Lj0g3v0310879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0310879.1 Non Chatacterized Hit- tr|D7LCK4|D7LCK4_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,38.69,2e-17,coiled-coil,NULL,CUFF.20967.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45540.1 | Symbols:  | WD-40 repeat family protein / beige-re...    80   6e-16
AT2G45540.2 | Symbols:  | WD-40 repeat family protein / beige-re...    80   6e-16
AT3G60920.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Beige/BEAC...    57   6e-09

>AT2G45540.1 | Symbols:  | WD-40 repeat family protein / beige-related
            | chr2:18757881-18772229 REVERSE LENGTH=2946
          Length = 2946

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 9/138 (6%)

Query: 1    MESSSQMRRCMKRNYQGSDHLGSAANYEDYTGDNKNNG-----QSAPILSAKAISID-GV 54
            MES S+MR+ ++RNY G+DH G+AA+Y+D T    +NG      + P+++A+ I ++   
Sbjct: 1970 MESFSRMRQSIRRNYSGTDHHGAAADYDDQTETKSDNGSKGSQSNPPVVAAEVILMEIAY 2029

Query: 55   NEDEQRETKDLDAKVNAIKD-RVENRPTFSEAAEKIVLESLESADTQHENDEGVLQSSSA 113
             EDE  E   LD K NA +  R E R   S + E     S  ++D +  ND  +++ SS 
Sbjct: 2030 EEDEHGEGDQLDVKGNAEEHKRDEGR--ISGSHEHASRTSAGNSDPRTSNDLEMVRDSSV 2087

Query: 114  FAPGYVPNEFDGRVFFRL 131
             APG+VP+E D R+   L
Sbjct: 2088 VAPGFVPSELDERILLEL 2105


>AT2G45540.2 | Symbols:  | WD-40 repeat family protein / beige-related
            | chr2:18757881-18772229 REVERSE LENGTH=3001
          Length = 3001

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 9/138 (6%)

Query: 1    MESSSQMRRCMKRNYQGSDHLGSAANYEDYTGDNKNNG-----QSAPILSAKAISID-GV 54
            MES S+MR+ ++RNY G+DH G+AA+Y+D T    +NG      + P+++A+ I ++   
Sbjct: 2025 MESFSRMRQSIRRNYSGTDHHGAAADYDDQTETKSDNGSKGSQSNPPVVAAEVILMEIAY 2084

Query: 55   NEDEQRETKDLDAKVNAIKD-RVENRPTFSEAAEKIVLESLESADTQHENDEGVLQSSSA 113
             EDE  E   LD K NA +  R E R   S + E     S  ++D +  ND  +++ SS 
Sbjct: 2085 EEDEHGEGDQLDVKGNAEEHKRDEGR--ISGSHEHASRTSAGNSDPRTSNDLEMVRDSSV 2142

Query: 114  FAPGYVPNEFDGRVFFRL 131
             APG+VP+E D R+   L
Sbjct: 2143 VAPGFVPSELDERILLEL 2160


>AT3G60920.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Beige/BEACH
            (InterPro:IPR000409); BEST Arabidopsis thaliana protein
            match is: WD-40 repeat family protein / beige-related
            (TAIR:AT2G45540.1); Has 1795 Blast hits to 1563 proteins
            in 214 species: Archae - 2; Bacteria - 29; Metazoa - 830;
            Fungi - 160; Plants - 230; Viruses - 0; Other Eukaryotes
            - 544 (source: NCBI BLink). | chr3:22503328-22513031
            REVERSE LENGTH=1941
          Length = 1941

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 1    MESSSQMRRCMKRNYQGSDHLGSAANYEDYTGDNKNNGQSAPILSAKAISIDGVNE-DEQ 59
            MESSS+MR+C++RNY G+ HL +  NY D T     N   +P+L+ +AIS + + E DE 
Sbjct: 1427 MESSSRMRQCLRRNYSGTGHLETTRNYGDQT--YLMNNHDSPVLAVEAISKEIMYEDDEH 1484

Query: 60   RETKDLDAKVNAIKDRVENRPTFSEAAEKIVLESLESADTQHENDEGVLQSSS 112
             +  DL+ + N  + + EN    S + E  +  S    D +  +++ ++Q+S+
Sbjct: 1485 GDADDLEIEGNVGERKGENEERRSGSLEDAITLSTGINDHRPLSEQNMVQNST 1537