Miyakogusa Predicted Gene
- Lj0g3v0310849.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0310849.1 CUFF.21053.1
(479 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 301 1e-81
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 288 6e-78
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 256 4e-68
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 256 4e-68
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 255 4e-68
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 255 4e-68
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 241 1e-63
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 241 1e-63
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 239 4e-63
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 238 5e-63
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 215 6e-56
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 215 6e-56
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 202 3e-52
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 181 8e-46
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 176 3e-44
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 163 3e-40
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 151 7e-37
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 148 1e-35
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 126 3e-29
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 119 4e-27
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 119 4e-27
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 9e-17
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 85 9e-17
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 1e-15
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 1e-15
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 79 7e-15
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 1e-14
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 76 4e-14
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 73 5e-13
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 73 5e-13
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 73 5e-13
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 73 5e-13
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 73 5e-13
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 71 2e-12
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 71 2e-12
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 71 2e-12
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 3e-12
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 70 4e-12
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 7e-12
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 8e-12
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 69 8e-12
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 9e-12
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 68 1e-11
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 68 2e-11
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 67 3e-11
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 66 6e-11
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 66 6e-11
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 66 6e-11
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 66 6e-11
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 66 6e-11
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 66 7e-11
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 8e-11
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 64 2e-10
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 64 2e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 64 2e-10
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 64 2e-10
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 64 2e-10
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 64 2e-10
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 64 2e-10
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 64 2e-10
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 64 3e-10
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 63 5e-10
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 62 7e-10
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 62 7e-10
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 61 2e-09
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 2e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 61 2e-09
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 60 2e-09
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 60 3e-09
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 60 3e-09
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 5e-09
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 8e-09
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 57 3e-08
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 5e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-08
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-08
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-08
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-08
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 55 1e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 55 1e-07
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 1e-07
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 55 1e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 54 2e-07
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 54 2e-07
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 54 2e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 5e-07
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 6e-07
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 51 2e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding pr... 49 5e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 5e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 49 6e-06
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 49 8e-06
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 9e-06
AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |... 49 1e-05
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 301 bits (770), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/247 (60%), Positives = 178/247 (72%), Gaps = 10/247 (4%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
MDSDQGKLF+GGISW+T+EDKL+EHF+NYG+V VMR+K TG+PRGFGFV+FSDP+VL
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
D VL++KH ID R VD KRA SRE+QQ+S R +TKKIFVGGLP
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVS--GRTGNLNTSRSSGGDAYNKTKKIFVGGLP 118
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
PTLT+E+FRQYFE YG VTDV +MYDQ T RPRGFGF+SFD+EDAVD VLHK+FHDL+GK
Sbjct: 119 PTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGK 178
Query: 181 QVEVKRALPKDANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQNAYDGRMDSSRYMQPQ 240
QVEVKRALPKDANP ++++YDGRMDS+R++Q Q
Sbjct: 179 QVEVKRALPKDANP--------GGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQ 230
Query: 241 SAAGGFP 247
S G P
Sbjct: 231 SVGNGLP 237
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 288 bits (737), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 171/248 (68%), Gaps = 8/248 (3%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+SDQGKLFIGGISWDT+E+ L+E+FSN+G+VL +VMREK TG+PRGFGFV FSDPAV+
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
D VL+DKH ID R VD KRA SRE+Q S R+ VRTKKIFVGGLP
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQ--SPAGRSGTFNASRNFDSGANVRTKKIFVGGLP 118
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
P LT ++FR YFE+YG V+D V+M DQ T RPRGFGF+SFD+ED+VD VLHK+FHDLNGK
Sbjct: 119 PALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGK 178
Query: 181 QVEVKRALPKDANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQNAYDGRMDSSRYMQPQ 240
QVEVKRALPKDANP R+DS+RYMQPQ
Sbjct: 179 QVEVKRALPKDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEG------RVDSNRYMQPQ 232
Query: 241 SAAGGFPP 248
+ G+PP
Sbjct: 233 NTGSGYPP 240
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 153/194 (78%), Gaps = 2/194 (1%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+SD GKLFIGGISWDT+E++L+++FSNYGDV+ +MR++ TG+ RGFGF+VF+DP V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ DKH+IDGRTV+AK+A R+DQQ V R RTKKIFVGGLP
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQ--VLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TEE+F+ YF+ +G + DVVVMYD NT RPRGFGFI+FD++DAVDRVLHK+FH+LNGK
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 179 LVEVKRAVPKEISP 192
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 153/194 (78%), Gaps = 2/194 (1%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+SD GKLFIGGISWDT+E++L+++FSNYGDV+ +MR++ TG+ RGFGF+VF+DP V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ DKH+IDGRTV+AK+A R+DQQ V R RTKKIFVGGLP
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQ--VLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TEE+F+ YF+ +G + DVVVMYD NT RPRGFGFI+FD++DAVDRVLHK+FH+LNGK
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 179 LVEVKRAVPKEISP 192
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 153/194 (78%), Gaps = 2/194 (1%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+SD GKLFIGGISWDT+E++L+++FSNYGDV+ +MR++ TG+ RGFGF+VF+DP V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ DKH+IDGRTV+AK+A R+DQQ V R RTKKIFVGGLP
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQ--VLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TEE+F+ YF+ +G + DVVVMYD NT RPRGFGFI+FD++DAVDRVLHK+FH+LNGK
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 179 LVEVKRAVPKEISP 192
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 153/194 (78%), Gaps = 2/194 (1%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+SD GKLFIGGISWDT+E++L+++FSNYGDV+ +MR++ TG+ RGFGF+VF+DP V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ DKH+IDGRTV+AK+A R+DQQ V R RTKKIFVGGLP
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQ--VLKRHASPIHLMSPVHGGGGRTKKIFVGGLP 118
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TEE+F+ YF+ +G + DVVVMYD NT RPRGFGFI+FD++DAVDRVLHK+FH+LNGK
Sbjct: 119 SSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 179 LVEVKRAVPKEISP 192
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
SD GKLFIGGISWDT+E++L+E+F YGD++ +MR++ TG+ RGFGF+VF+DP+V +
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 63 VLEDKHVIDGRTVDAKRAFSREDQQI-SVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
V+ DKH+IDGRTV+AK+A R+DQQ+ + RTKKIFVGGLP
Sbjct: 69 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 128
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
++TE +F+ YF+ +G + DVVVMYD NT RPRGFGFI+FD+E++VD VLHK+FH+LNGK
Sbjct: 129 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 188
Query: 182 VEVKRALPKD 191
VEVKRA+PK+
Sbjct: 189 VEVKRAVPKE 198
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
SD GKLFIGGISWDT+E++L+E+F YGD++ +MR++ TG+ RGFGF+VF+DP+V +
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VLEDKHVIDGRTVDAKRAFSREDQQI-SVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
V+ DKH+IDGRTV+AK+A R+DQQ+ + RTKKIFVGGLP
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
++TE +F+ YF+ +G + DVVVMYD NT RPRGFGFI+FD+E++VD VLHK+FH+LNGK
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191
Query: 182 VEVKRALPKD 191
VEVKRA+PK+
Sbjct: 192 VEVKRAVPKE 201
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 148/194 (76%), Gaps = 4/194 (2%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M SD GKLFIGGISWDTNE++LKE+FS++G+V+ +++++ TG+ RGFGFVVF+DPAV
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ +KH IDGR V+AK+A R+DQ + S + RT+KIFVGGLP
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG----RTRKIFVGGLP 116
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TE F+ YFE +G TDVVVMYD NT RPRGFGFI++D+E+AV++VL K+FH+LNGK
Sbjct: 117 SSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGK 176
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 177 MVEVKRAVPKELSP 190
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 238 bits (608), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 148/194 (76%), Gaps = 4/194 (2%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M SD GKLFIGGISWDTNE++LKE+FS++G+V+ +++++ TG+ RGFGFVVF+DPAV
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ +KH IDGR V+AK+A R+DQ + S + RT+KIFVGGLP
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG----RTRKIFVGGLP 116
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TE F+ YFE +G TDVVVMYD NT RPRGFGFI++D+E+AV++VL K+FH+LNGK
Sbjct: 117 SSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGK 176
Query: 181 QVEVKRALPKDANP 194
VEVKRA+PK+ +P
Sbjct: 177 MVEVKRAVPKELSP 190
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 215 bits (547), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 6/191 (3%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+ + KLFIGGISW+T+ED+L+++F ++G+VL +M+++ TG+ RGFGFVVF+DP V
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ KH+IDG+ V+AK+A R+D + S + +KKIFVGGL
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPS------NSKKIFVGGLA 114
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TE +F++YF +G +TDVVVMYD T RPRGFGFIS+D+E+AVD+VL K+FH+LNGK
Sbjct: 115 SSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
Query: 181 QVEVKRALPKD 191
VEVK A+PKD
Sbjct: 175 MVEVKLAVPKD 185
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 215 bits (547), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 6/191 (3%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+ + KLFIGGISW+T+ED+L+++F ++G+VL +M+++ TG+ RGFGFVVF+DP V
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
+ V+ KH+IDG+ V+AK+A R+D + S + +KKIFVGGL
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPS------NSKKIFVGGLA 114
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
++TE +F++YF +G +TDVVVMYD T RPRGFGFIS+D+E+AVD+VL K+FH+LNGK
Sbjct: 115 SSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
Query: 181 QVEVKRALPKD 191
VEVK A+PKD
Sbjct: 175 MVEVKLAVPKD 185
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 140/213 (65%), Gaps = 28/213 (13%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M+ + KLFIGGISW+T+ED+L+++F ++G+VL +M+++ TG+ RGFGFVVF+DP V
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 DAVLEDKHVIDGR----------------------TVDAKRAFSREDQQISVTSRAXXXX 98
+ V+ KH+IDG+ V+AK+A R+D + S +
Sbjct: 61 ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG 120
Query: 99 XXXXXXXXXXVRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFI 158
+KKIFVGGL ++TE +F++YF +G +TDVVVMYD T RPRGFGFI
Sbjct: 121 SPGPS------NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 174
Query: 159 SFDNEDAVDRVLHKSFHDLNGKQVEVKRALPKD 191
S+D+E+AVD+VL K+FH+LNGK VEVK A+PKD
Sbjct: 175 SYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKD 207
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 128/199 (64%), Gaps = 8/199 (4%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
MD D+ KLF+GGI+ +T+E+ LK++FS YG VL V +EK TGKPRGFGFV F++ +
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 DAVLEDKHVIDGRTVDAKRAFSRED--------QQISVTSRAXXXXXXXXXXXXXXVRTK 112
L D H I G+ VD ++A + + Q + + RTK
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVGGL TEE+F+ YFE +G TDVVVM+D T RPRGFGF+++D+ED+V+ V+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 173 SFHDLNGKQVEVKRALPKD 191
+FH+L+ K+VEVKRA+PK+
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 119/186 (63%), Gaps = 16/186 (8%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
GKLF+GG+SW+T + +F +G+V+++ +M ++ TG PRGFGFV F+D AV + VLE
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ HVID R VD KR R D+ + + + +T+KIFVGGLPP L E
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIKAVS---------------KTRKIFVGGLPPLLEE 170
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
++ + YF YG + + +MYD +TGR RGFGF++F ED+VDR+ H+L KQVE+
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEI 230
Query: 185 KRALPK 190
KRA PK
Sbjct: 231 KRAEPK 236
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 17/188 (9%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
GK+FIGG+ DT +HF YG++ ++ +MR+++TG+PRGFGF+ F+DP+V+D V+E
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
D HVI+G+ V+ KR + ++TKKIFVGG+P T+TE
Sbjct: 79 DTHVINGKQVEIKRTIPK----------------GAGGNQSKDIKTKKIFVGGIPSTVTE 122
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
++ + +F YG+V + V+ D T R RGFGF+ FD+E+ VD +L K + D+ QVE+
Sbjct: 123 DELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEI 182
Query: 185 KRALPKDA 192
K+A PK +
Sbjct: 183 KKAEPKKS 190
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 120/189 (63%), Gaps = 19/189 (10%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
GK+F+GG++ +T + +HF YG++ ++ +M+++ TG+PRGFGFV ++D +V+D V++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
D H+I G+ V+ KR R +TKKIFVGG+P ++ +
Sbjct: 102 DNHIIIGKQVEIKRTIPR------------------GSMSSNDFKTKKIFVGGIPSSVDD 143
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFH-DLNGKQVEV 184
++F+++F +G + + +M D +TGR RGFGF+++++ED VD +L K +L+G QVE+
Sbjct: 144 DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
Query: 185 KRALPKDAN 193
K+A PK N
Sbjct: 204 KKAEPKKPN 212
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 112/182 (61%), Gaps = 17/182 (9%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE 65
GK+FIGG+ DT +HF YG++ ++ +MR+++TG+PRGFGF+ F+DP+V+D V+E
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
D HVI+G+ V+ KR + ++TKKIFVGG+P T+TE
Sbjct: 79 DTHVINGKQVEIKRTIPK----------------GAGGNQSKDIKTKKIFVGGIPSTVTE 122
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
++ + +F YG+V + V+ D T R RGFGF+ FD+E+ VD +L K + D+ QV +
Sbjct: 123 DELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSL 182
Query: 185 KR 186
+
Sbjct: 183 YK 184
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIF+GGL T F ++F YG +TD V+M D++TG+PRGFGFI+F + VD+V+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 173 SFHDLNGKQVEVKRALPKDA 192
+ H +NGKQVE+KR +PK A
Sbjct: 80 T-HVINGKQVEIKRTIPKGA 98
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 6/117 (5%)
Query: 75 VDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEKFRQYFES 134
V+AK+A R+D + S + +KKIFVGGL ++TE +F++YF
Sbjct: 15 VEAKKAVPRDDHVVFNKSNSSLQGSPGPS------NSKKIFVGGLASSVTEAEFKKYFAQ 68
Query: 135 YGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVKRALPKD 191
+G +TDVVVMYD T RPRGFGFIS+D+E+AVD+VL K+FH+LNGK VEVK A+PKD
Sbjct: 69 FGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKD 125
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S+ K+F+GG++ E + K++F+ +G + + VM + T +PRGFGF+ + +D
Sbjct: 43 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 102
Query: 63 VLEDK-HVIDGRTVDAKRAFSRE 84
VL+ H ++G+ V+ K A ++
Sbjct: 103 VLQKTFHELNGKMVEVKLAVPKD 125
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KL + GI WD + D LK++ S +GD+ + VM++++TG+ RGFG+V F+ L+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
+H + R ++ K A +E+ + + +IFV +P +++E
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAK------------------KVTRIFVARIPSSVSES 105
Query: 127 KFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVKR 186
FR +FE YG +TD+ + D N+ + RG GFI+F + D+V+ ++ + HDL G V V R
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDR 164
Query: 187 ALPKD 191
A PK+
Sbjct: 165 ATPKE 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVG LP + + R YF +GH+ D + D RGFGF++F DRV +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 173 SFHDLNGKQVEVKRALPKD 191
S H++ G++V + A P D
Sbjct: 301 S-HEICGQEVAIDSATPLD 318
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 112 KKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH 171
+K+ V G+P + + + Y +G + D +VM D++TGR RGFG+++F + + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 172 KSFHDLNGKQVEVKRALPKD 191
K H L + +EVK A PK+
Sbjct: 62 KGEHFLGNRILEVKVATPKE 81
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++F+ I +E + HF YG++ + + ++ N+ + RG GF+ FS ++ ++ED
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHVIDGRTVDAKRAFSREDQQ 87
H + G TV RA +ED
Sbjct: 152 THDLGGTTVAVDRATPKEDDH 172
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 19/185 (10%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KL + GI WD + D LK++ S +GD+ + VM++++TG+ RGFG+V F+ L+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
+H + R ++ K A +E+ + + +IFV +P +++E
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAK------------------KVTRIFVARIPSSVSES 105
Query: 127 KFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVKR 186
FR +FE YG +TD+ + D N+ + RG GFI+F + D+V+ ++ + HDL G V V R
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDR 164
Query: 187 ALPKD 191
A PK+
Sbjct: 165 ATPKE 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVG LP + + R YF +GH+ D + D RGFGF++F DRV +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 173 SFHDLNGKQVEVKRALPKD 191
S H++ G++V + A P D
Sbjct: 301 S-HEICGQEVAIDSATPLD 318
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 112 KKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH 171
+K+ V G+P + + + Y +G + D +VM D++TGR RGFG+++F + + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 172 KSFHDLNGKQVEVKRALPKD 191
K H L + +EVK A PK+
Sbjct: 62 KGEHFLGNRILEVKVATPKE 81
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++F+ I +E + HF YG++ + + ++ N+ + RG GF+ FS ++ ++ED
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHVIDGRTVDAKRAFSREDQQ 87
H + G TV RA +ED
Sbjct: 152 THDLGGTTVAVDRATPKEDDH 172
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
D Q KLFI G++ DT + L+ FS+YGD+ V+ +K TGK +G+GFV F
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMH----- 125
Query: 62 AVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+DG + K + D +++VT A + +KI+V +P
Sbjct: 126 --------VDGALLALKEPSKKIDGRVTVTQLA-ASGNQGTGSQIADISMRKIYVANVPF 176
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
+ ++ +F +YG V + + +D+ TG+ RGF + + L ++GK
Sbjct: 177 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 236
Query: 182 VEVKRAL 188
+ K A+
Sbjct: 237 LNCKLAV 243
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
D Q KLFI G++ DT + L+ FS+YGD+ V+ +K TGK +G+GFV F
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMH----- 125
Query: 62 AVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+DG + K + D +++VT A + +KI+V +P
Sbjct: 126 --------VDGALLALKEPSKKIDGRVTVTQLA-ASGNQGTGSQIADISMRKIYVANVPF 176
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
+ ++ +F +YG V + + +D+ TG+ RGF + + L ++GK
Sbjct: 177 DMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKH 236
Query: 182 VEVKRAL 188
+ K A+
Sbjct: 237 LNCKLAV 243
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T + L+ HF YGD+L V+ +KNTG+ +G+GFV F DP A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 61 DAVLEDKHVIDGRTVDAKRAF---SREDQQISVTSRA 94
A ++ +IDGR + A SR Q +V A
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHA 116
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL E R++F+ YG + + VV+ D+NTGR +G+GF++F + +A R
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T + L+ HF YGD+L V+ +KNTG+ +G+GFV F DP A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 61 DAVLEDKHVIDGRTVDAKRAF---SREDQQISVTSRA 94
A ++ +IDGR + A SR Q +V A
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHA 116
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL E R++F+ YG + + VV+ D+NTGR +G+GF++F + +A R
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 26/186 (13%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S++ KLF+G +++D N L F G V V+ + T + RGFGFV S +
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 63 VLE--DKHVIDGRTVDAKRAF---SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVG 117
+E +++ ++GR + +A SR ++ V A +++VG
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF-----------------RVYVG 249
Query: 118 GLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDL 177
LP + + Q F +G V + V+YD+ TGR RGFGF++ + D L+++ L
Sbjct: 250 NLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE----LNEAISAL 305
Query: 178 NGKQVE 183
+G+ +E
Sbjct: 306 DGQNLE 311
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++++G + WD + +L++ FS +G V+ V+ ++ TG+ RGFGFV SD +D + E
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD---VDELNEA 301
Query: 67 KHVIDGRTVDAK 78
+DG+ ++ +
Sbjct: 302 ISALDGQNLEGR 313
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVG L + + FE G V V+Y++ T + RGFGF++ + D + + K
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 173 -SFHDLNGKQVEVKRALPKDANP 194
+ +DLNG+ + V +A P+ + P
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRP 233
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T + L++HF YG++L V+ +KNTG+ +G+GFV F DP A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A + +IDGR + A
Sbjct: 80 RACADPTPIIDGRRANCNLA 99
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL E RQ+FE YG + + VV+ D+NTGR +G+GF++F + +A R
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 23/190 (12%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
++ KLF+G + +D + L F G V + V+ ++T + RGFGFV S +
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 64 LE--DKHVIDGRTVDAKRAF---SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGG 118
+E + ++GR + RA SR ++Q V A +I+VG
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF-----------------RIYVGN 213
Query: 119 LPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDL 177
LP + + + F +G V D V+ D+ TGR RGFGF+ NE+ V+ + +L
Sbjct: 214 LPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNL 273
Query: 178 NGKQVEVKRA 187
G+ ++V A
Sbjct: 274 EGRAIKVNVA 283
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVG LP + + FE G V V+Y+++T + RGFGF++ + ++ + K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 173 --SFHDLNGKQVEVKRALPKDANP 194
SF ++NG+++ V RA P+ + P
Sbjct: 174 FNSF-EVNGRRLTVNRAAPRGSRP 196
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+ G+ WDT + L E F YG++ + + +K +GK +G+GF+++ S +A+ +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I R + + + A KKI+V + L
Sbjct: 201 PQKKIGSRMTACQ--LASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
+K +F +G + + + D+ TGRP+GF + + ++ R L + G + +
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQ 318
Query: 186 RAL 188
+A+
Sbjct: 319 KAI 321
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+ G+ WDT + L E F YG++ + + +K +GK +G+GF+++ S +A+ +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I R + + + A KKI+V + L
Sbjct: 201 PQKKIGSRMTACQ--LASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
+K +F +G + + + D+ TGRP+GF + + ++ R L + G + +
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQ 318
Query: 186 RAL 188
+A+
Sbjct: 319 KAI 321
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+ G+ WDT + L E F YG++ + + +K +GK +G+GF+++ S +A+ +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I R + + + A KKI+V + L
Sbjct: 201 PQKKIGSRMTACQ--LASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
+K +F +G + + + D+ TGRP+GF + + ++ R L + G + +
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQ 318
Query: 186 RAL 188
+A+
Sbjct: 319 KAI 321
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+ G+ WDT + L E F YG++ + + +K +GK +G+GF+++ S +A+ +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I R + + + A KKI+V + L
Sbjct: 201 PQKKIGSRMTACQ--LASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
+K +F +G + + + D+ TGRP+GF + + ++ R L + G + +
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQ 318
Query: 186 RAL 188
+A+
Sbjct: 319 KAI 321
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+ G+ WDT + L E F YG++ + + +K +GK +G+GF+++ S +A+ +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I R + + + A KKI+V + L
Sbjct: 201 PQKKIGSRMTACQ--LASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDP 258
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
+K +F +G + + + D+ TGRP+GF + + ++ R L + G + +
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQ 318
Query: 186 RAL 188
+A+
Sbjct: 319 KAI 321
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
KLF+G + ++ + +L + F + G+V V+ +K TG+ RGFGFV S + ++A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 66 -DKHVIDGRT--VDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRT---KKIFVGGL 119
+ + +DGR V+A + + S R+ +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFH--DL 177
+ + F G V + V+YD+++GR +GFGF+++D+ V + KS DL
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI-KSLDGADL 270
Query: 178 NGKQVEVKRA 187
+G+Q+ V A
Sbjct: 271 DGRQIRVSEA 280
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVG LP + + Q FES G+V V V+YD+ TGR RGFGF++ + V+ +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 173 -SFHDLNGKQVEVKRALP 189
+ ++L+G+ + V P
Sbjct: 152 FNGYELDGRPLRVNAGPP 169
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ K+FVGGL + +Q F S+G VT+ V+ D+ TGR RGFGF+SF ED+ + +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 171 HK-SFHDLNGKQVEVKRALPKDANP 194
+ +LNG+Q+ V A + + P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFS-DPAVLDAVLE 65
KLF+GG+SW T++ LK+ F+++G+V +V+ ++ TG+ RGFGFV FS + + +A+ E
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 66 -DKHVIDGRTVDAKRAFSR 83
D ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
+ K+FVGGL + +Q F S+G VT+ V+ D+ TGR RGFGF+SF ED+ + +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 171 HK-SFHDLNGKQVEVKRALPKDANP 194
+ +LNG+Q+ V A + + P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFS-DPAVLDAVLE 65
KLF+GG+SW T++ LK+ F+++G+V +V+ ++ TG+ RGFGFV FS + + +A+ E
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 66 -DKHVIDGRTVDAKRAFSR 83
D ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T++ L+ +F +GD++ V+ +K++G+ +G+GFV F DP A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A ++ VIDGR + A
Sbjct: 63 KACVDPAPVIDGRRANCNLA 82
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL + R YFE +G + + VV+ D+++GR +G+GF++F + +A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 68 PAPVIDGRRANCNLA 82
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T++ L+ +F +GD++ V+ +K++G+ +G+GFV F DP A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A ++ VIDGR + A
Sbjct: 63 KACVDPAPVIDGRRANCNLA 82
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL + R YFE +G + + VV+ D+++GR +G+GF++F + +A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 68 PAPVIDGRRANCNLA 82
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+ G+ WDT D L + F YG++ + + +K +G+ +G+GF++F S +A+ +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I R + A Q V + A +KI+V + +
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV--------QRKIYVSNVSADIDP 240
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL---HKSF 174
+K ++F +G + + + D+ TGRP+GF + + ++ + L HK+F
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTF 292
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+ G+ WDT D L + F YG++ + + +K +G+ +G+GF++F S +A+ +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I R + A Q V + A +KI+V + +
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV--------QRKIYVSNVSADIDP 240
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL---HKSF 174
+K ++F +G + + + D+ TGRP+GF + + ++ + L HK+F
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTF 292
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF--SDPAV 59
D+ K+F+GG++W+T D+++ +F +G++L ++ +KNTGK +G+GFV F SD A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 60 LDAVLEDKHVIDGRTVDAKRA 80
AV + VIDGR + A
Sbjct: 73 -RAVADPNPVIDGRKANCNIA 92
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL ++ R+YFE +G + + V++ D+NTG+ +G+GF++F D+ R +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 78 PNPVIDGRKANCNIA 92
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 18/180 (10%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++ +S T +D+LK F YG + + VMR+ + GK R FGFV F +P +E
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVE-- 283
Query: 68 HVIDGRTVDAK-----RAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPT 122
++G+ D K +A + ++++ ++ R ++V L T
Sbjct: 284 -ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGL----NLYVKNLDDT 338
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQV 182
+T+EK R+ F +G +T VM D +G +G GF++F RVL +++NGK V
Sbjct: 339 VTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL----NEMNGKMV 393
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF--SDPAV 59
D+ K+F+GG++W+T D+++ +F +G++L ++ +KNTGK +G+GFV F SD A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 60 LDAVLEDKHVIDGRTVDAKRA 80
AV + VIDGR + A
Sbjct: 73 -RAVADPNPVIDGRKANCNIA 92
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
K+FVGGL ++ R+YFE +G + + V++ D+NTG+ +G+GF++F D+ R +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T D ++ +F +G+++ V+ +KNTG+ +G+GFV F + A +
Sbjct: 18 DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A VIDGR + A
Sbjct: 78 RACQNMNPVIDGRRANCNLA 97
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
+ KIFVGGL + R+YFE +G + + VV+ D+NTGR +G+GF++F +A R
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Query: 169 VLHKSFHDLNGKQVEVKRAL 188
++G++ A
Sbjct: 79 ACQNMNPVIDGRRANCNLAC 98
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T D+++ +F +G++L ++ +K TGK +G+GFV F D +
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
AV + VIDGR + A
Sbjct: 73 RAVADPNPVIDGRKANCNIA 92
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 45/75 (60%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL ++ R+YF+ +G + + V++ D+ TG+ +G+GF++F + D+ R +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 173 SFHDLNGKQVEVKRA 187
++G++ A
Sbjct: 78 PNPVIDGRKANCNIA 92
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 5/163 (3%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
+ D +++ + +D L FS YG V + VMR+ G+ RGFGFV F +P
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAK 256
Query: 62 AVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+E + G + +K+ F + + +R ++V L
Sbjct: 257 KAMES---LCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSE 313
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED 164
++ E + R+ F YG + VM +N GR +GFGF+ F N +
Sbjct: 314 SMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCE 355
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++ + L+ F +G +L+ V+ E G+ +GFGFV F + + +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTE---QSAVSAR 168
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
+ G V K+ F + I+ RA + ++V L T+T++
Sbjct: 169 SALHGSMVYGKKLFV--AKFINKDERAAMAGNQD---------STNVYVKNLIETVTDDC 217
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSF-HDLNGKQVEVKR 186
F YG V+ VVVM D GR RGFGF++F N + + + L K++ V +
Sbjct: 218 LHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGK 276
Query: 187 ALPKD 191
AL KD
Sbjct: 277 ALKKD 281
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T+++ +K+HF +G++L V+ +K +G+ +G+GFV F + A
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A ++ VIDGR + A
Sbjct: 69 SACVDATPVIDGRRANCNLA 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL +E +++FE +G + + VV+ D+ +GR +G+GF++F +A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 173 SFHDLNGKQVEVKRA 187
+ ++G++ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T+++ +K+HF +G++L V+ +K +G+ +G+GFV F + A
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A ++ VIDGR + A
Sbjct: 69 SACVDATPVIDGRRANCNLA 88
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
K+FVGGL +E +++FE +G + + VV+ D+ +GR +G+GF++F +A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 173 SFHDLNGKQVEVKRA 187
+ ++G++ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVLDAVLE 65
+ F+GG++W TN++ L+ FS +GDV+++ ++ ++ +G+ RGFGFV F D A+ DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 66 -DKHVIDGRTVDAKRAFSR 83
+ +DGR + A SR
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
+ FVGGL +E ++ F +G V D ++ D+ +GR RGFGF++F +E A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKA----MRD 62
Query: 173 SFHDLNGKQVE 183
+ ++NGK+++
Sbjct: 63 AIEEMNGKELD 73
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
D+ K+F+GG++W+T+++ +K+HF +G++L V+ +K +G+ +G+GFV F + A
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A ++ VIDGR + A
Sbjct: 69 SACVDATPVIDGRRANCNLA 88
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDA 165
K+FVGGL +E +++FE +G + + VV+ D+ +GR +G+GF++F +A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLH 171
+IFVGGL +TE + F+ YG +T+ +M ++TGRPRGFGFI+F D A D + H
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 172 KSFHDLNGKQVEVKRALPK 190
+L K + V +A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 5 QGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVL 64
+ ++F+GG+SWD E +L+ F YG + +M ++TG+PRGFGF+ F+D D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 65 EDKH 68
+ H
Sbjct: 71 KHMH 74
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLH 171
+IFVGGL +TE + F+ YG +T+ +M ++TGRPRGFGFI+F D A D + H
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 172 KSFHDLNGKQVEVKRALPK 190
+L K + V +A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 5 QGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVL 64
+ ++F+GG+SWD E +L+ F YG + +M ++TG+PRGFGF+ F+D D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 65 EDKH 68
+ H
Sbjct: 71 KHMH 74
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
+ F+GGL T ++ R FE YGH+ + V+ D+ +GR RGFGFI+FD + A+D +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 173 -SFHDLNGKQVEVKRALP 189
+ DL+G+ + V +A P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+ FIGG++W T++ L++ F YG ++ V+ +K +G+ RGFGF+ F + +D +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 66 -DKHVIDGRTVDAKRA 80
+ +DGRT+ +A
Sbjct: 68 MNGMDLDGRTITVDKA 83
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++ + D +ED L+E F+ +G +++ ++ +++N RG+ FV F +P +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNP---EDARRAA 258
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXV-RTKKIFVGGLPPTLTEE 126
++G +K + Q+ + + + + I+V + +TEE
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 127 KFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRVLHKSFH 175
+ R++F G +T +M D+ G+ +GFGF+ F E+A+D V K+FH
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV--KTFH 365
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
D+ K+F+GG++WDT+++ + +HF YGD+L ++ +K T + +G+GFV F D
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 62 AVLEDKH-VIDGRTVDAKRA 80
ED +I+GR + A
Sbjct: 73 RACEDSTPIINGRRANCNLA 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 110 RTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
+ K+FVGGL +E +F YG + + V++ D+ T R +G+GF++F + A R
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
Query: 170 LHKSFHDLNGKQVEVKRA 187
S +NG++ A
Sbjct: 75 CEDSTPIINGRRANCNLA 92
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
+IFVGGL P +T+ + F +G + D +M +++TGR RGFGFI+F + A+D + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 173 SF-HDLNGKQVEVKRALPK 190
D + + V RA PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++F+GG+S + + L+ FS +GD+L+ +M E++TG+ RGFGF+ F+D +D + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 67 KHVID 71
H D
Sbjct: 68 MHGRD 72
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 33/190 (17%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
++FIGG+ D E+ L++ G++ +M+++++G +G+ FV F V +E+
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEE 126
H + +A S + +S+++R +F+G +P TE+
Sbjct: 177 LHSKEF------KASSTANCSLSLSNR--------------------LFIGNIPKNWTED 210
Query: 127 KFRQYFESYGH-VTDVVVMYD-QNTGRPRGFGFISFDNEDAVD----RVLHKSFHDLNGK 180
+FR+ E G V ++ ++ D NT R RGF F+ + N D +++ +F L G
Sbjct: 211 EFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFK-LEGN 269
Query: 181 QVEVKRALPK 190
V A PK
Sbjct: 270 APTVTWADPK 279
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFIGG+++ +ED L+E F+ YG+V++T V+ ++ TG+ RGFGFV F+ + ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ- 99
Query: 67 KHVIDGRTVDAK 78
+DGR + +
Sbjct: 100 --ALDGRDLHGR 109
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
+ + K+F+GG+ ++ E+ R+ F YG V D V+ D+ TGR RGFGF++F + +A
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 169 VLHK-SFHDLNGKQVEVKRA 187
+ DL+G+ V+V A
Sbjct: 97 AIQALDGRDLHGRVVKVNYA 116
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLF+G + E++++ +F +G+VL +++++K TG+ +G FV ++
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT---------- 95
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTK--KIFVGGLPPTLT 124
+ DA RA QI++ + T K+FVG L T
Sbjct: 96 -------SKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQAT 148
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED 164
E++ + F +GHV DV +M D+ + RG GF+ + +++
Sbjct: 149 EKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 187
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
T K+FVG +P T TEE+ R YFE +G+V +V ++ D+ TG+ +G F+ + DR +
Sbjct: 44 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 103
Query: 171 HKSFHD 176
++ H+
Sbjct: 104 -RALHN 108
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLF+G + E++++ +F +G+VL +++++K TG+ +G FV ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT---------- 170
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTK--KIFVGGLPPTLT 124
+ DA RA QI++ + T K+FVG L T
Sbjct: 171 -------SKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQAT 223
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED 164
E++ + F +GHV DV +M D+ + RG GF+ + +++
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
T K+FVG +P T TEE+ R YFE +G+V +V ++ D+ TG+ +G F+ + DR +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 171 HKSFHD 176
++ H+
Sbjct: 179 -RALHN 183
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+ F+GG++W TN++ L+ FS +GDV+++ ++ ++ +G+ RGFGFV F D + +E+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--VIDGRTVDAKRA 80
+ +DGR + A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
+ FVGGL +E ++ F +G V D ++ D+ +GR RGFGF++F +E A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKA----MRD 62
Query: 173 SFHDLNGKQVE 183
+ ++NGK+++
Sbjct: 63 AIEEMNGKELD 73
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF--SDPAVLDAVLE 65
+++ ++ T +D LK F YG + + VM++ GK +GFGFV F +D A
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 275
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ H D + RA + +++ + R ++ ++V L P++++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVR----YEQNLKEAADKFQSSNLYVKNLDPSISD 331
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
EK ++ F +G VT VM D N G +G GF++F + + + L+GK +E K
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQ----LSGKMIESK 386
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S G +FI + + L + FS++G++++ V + ++G+ +G+GFV +++
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQK 179
Query: 63 VLEDKHVIDGRTVDAKRA----FSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGG 118
+E ++G ++ K+ F R ++ S ++ + ++V
Sbjct: 180 AIEK---LNGMLLNDKQVYVGPFLRRQERDSTANK---------------TKFTNVYVKN 221
Query: 119 LPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDL 177
L + T++ + F YG +T VVM D G+ +GFGF++F+N D R + + H
Sbjct: 222 LAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKF 280
Query: 178 NGKQVEVKRALPK 190
+ K+ V RA K
Sbjct: 281 DDKEWYVGRAQKK 293
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++G + ++ + +L + F G V+ V R+ T + G+G+V F++P +++
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
+ I + +S D + + IF+ L ++ +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAG------------------NIFIKNLDESIDHKA 139
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
F S+G++ V D ++G+ +G+GF+ + NE++ + + K + LN KQV V
Sbjct: 140 LHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 38/200 (19%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
++G+L++G + + +L + F G V++ ++ +K T + RGFGFV
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 64 LE--DKHVIDGRTV-------------DAKRAFSREDQQISVTSRAXXXXXXXXXXXXXX 108
++ + I GRTV + R R++ + V S
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDS---------------- 217
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
K++ G L LT + + F V V+Y++NTGR RGFGFISF++ + V
Sbjct: 218 --PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 169 VLHKSFHDLNGKQVEVKRAL 188
L +NG +VE RAL
Sbjct: 276 ALAT----MNGVEVE-GRAL 290
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
K++ G + W+ LK+ F + VL V+ E+NTG+ RGFGF+ F + + L
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 67 KH--VIDGRTVDAKRAFSREDQQIS 89
+ ++GR + A RE +S
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVS 304
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLF+G + E++++ +F +G+VL +++++K TG+ +G FV ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT---------- 170
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTK--KIFVGGLPPTLT 124
+ DA RA QI++ + T K+FVG L T
Sbjct: 171 -------SKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQAT 223
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED 164
E++ + F +GHV DV +M D+ + RG GF+ + +++
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVL 170
T K+FVG +P T TEE+ R YFE +G+V +V ++ D+ TG+ +G F+ + DR +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 171 HKSFHD 176
++ H+
Sbjct: 179 -RALHN 183
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 37/185 (20%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD---PAVLDAVL 64
+++G I E L+E F++ G V ++ ++R+ + +GFV + D A+ L
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 116
Query: 65 EDKHVIDGRTVDAKRAFS---REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+H+ G+ + A++ RED IFVG L P
Sbjct: 117 NGRHLF-GQPIKVNWAYATGQREDTSSHF----------------------NIFVGDLSP 153
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
+T+ Q F + +D VM+DQ TGR RGFGF+SF N+ + +++NGK
Sbjct: 154 EVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDA----QTAINEMNGKW 209
Query: 182 VEVKR 186
+ ++
Sbjct: 210 LSSRQ 214
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+ F+GG++W T++ L+ F+ YGDV+++ ++ ++ TG+ RGFGFV F D + +E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 66 -DKHVIDGRTVDAKRA 80
+ +DGR++ A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV-DRVLH 171
+ FVGGL + F YG V D ++ D+ TGR RGFGF++F +E A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 172 KSFHDLNGKQVEVKRA 187
+ DL+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
+ F+GG++W T++ L+ F+ YGDV+++ ++ ++ TG+ RGFGFV F D + +E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 66 -DKHVIDGRTVDAKRA 80
+ +DGR++ A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV-DRVLH 171
+ FVGGL + F YG V D ++ D+ TGR RGFGF++F +E A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 172 KSFHDLNGKQVEVKRA 187
+ DL+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++ + + +D+LK+ F YGD+ + VM+++ +G R FGFV F P +E
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 68 HVID-GRTVD-AKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I G V RA + D++ + + ++ +++ L ++ +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRK----FEQERISRFEKLQGSNLYLKNLDDSVND 355
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRVLHKSFHDLNGKQV 182
EK ++ F YG+VT VM + + G RGFGF+++ N E+A+ + ++NGK +
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEAL-----LAMKEMNGKMI 407
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S +G +FI + + L E FS++G +L+ V + G+ +G+GFV F A
Sbjct: 143 SGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQA 201
Query: 63 VLEDKHVIDGRTVDAKRAF-----SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVG 117
++ ++G ++ K+ F R+D+ S + ++V
Sbjct: 202 AIDK---LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFT--------------NVYVK 244
Query: 118 GLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
LP +T+++ ++ F YG ++ VVM DQ +G R FGF++F + +A + K
Sbjct: 245 NLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEK 298
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++ + + +D+LK+ F YGD+ + VM+++ +G R FGFV F P +E
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 68 HVID-GRTVD-AKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
+ I G V RA + D++ + + ++ +++ L ++ +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRK----FEQERISRFEKLQGSNLYLKNLDDSVND 355
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRVLHKSFHDLNGKQV 182
EK ++ F YG+VT VM + + G RGFGF+++ N E+A+ + ++NGK +
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEAL-----LAMKEMNGKMI 407
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S +G +FI + + L E FS++G +L+ V + G+ +G+GFV F A
Sbjct: 143 SGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQA 201
Query: 63 VLEDKHVIDGRTVDAKRAF-----SREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVG 117
++ ++G ++ K+ F R+D+ S + ++V
Sbjct: 202 AIDK---LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFT--------------NVYVK 244
Query: 118 GLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
LP +T+++ ++ F YG ++ VVM DQ +G R FGF++F + +A + K
Sbjct: 245 NLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEK 298
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFIGG+SW T++ L++ F+++GDV++ V+ ++ TG+ RGFGFV F+D A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 KHVIDGRTVDAK 78
+DG+ ++ +
Sbjct: 96 ---MDGKELNGR 104
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
+ + K+F+GGL + R F +G V D V+ D+ TGR RGFGF++F++E A
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 91
Query: 169 VLHK-SFHDLNGKQVEVKRALPKDANP 194
+ + +LNG+ + V A + + P
Sbjct: 92 AISEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFIGG+SW T++ L++ F+++GDV++ V+ ++ TG+ RGFGFV F+D A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 KHVIDGRTVDAK 78
+DG+ ++ +
Sbjct: 96 ---MDGKELNGR 104
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
+ + K+F+GGL + R F +G V D V+ D+ TGR RGFGF++F++E A
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 91
Query: 169 VLHK-SFHDLNGKQVEVKRALPKDANP 194
+ + +LNG+ + V A + + P
Sbjct: 92 AISEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFIGG+SW T++ L++ F+++GDV++ V+ ++ TG+ RGFGFV F+D A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 KHVIDGRTVDAK 78
+DG+ ++ +
Sbjct: 96 ---MDGKELNGR 104
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
+ + K+F+GGL + R F +G V D V+ D+ TGR RGFGF++F++E A
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 91
Query: 169 VLHK-SFHDLNGKQVEVKRALPKDANP 194
+ + +LNG+ + V A + + P
Sbjct: 92 AISEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD-PAV 59
M + + F+GG++W TN++ L+ FS +GDV+++ ++ ++ +G+ RGFGFV F D A+
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 60 LDAVLE-DKHVIDGRTVDAKRA 80
DA+ E + +DGR + A
Sbjct: 61 RDAIEEMNGKELDGRVITVNEA 82
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
+ FVGGL +E ++ F +G V D ++ D+ +GR RGFGF++F +E A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKA----MRD 62
Query: 173 SFHDLNGKQVE 183
+ ++NGK+++
Sbjct: 63 AIEEMNGKELD 73
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFIGG+SW T++ L++ F+++GDV++ V+ ++ TG+ RGFGFV F+D A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 KHVIDGRTVDAK 78
+DG+ ++ +
Sbjct: 96 ---MDGKELNGR 104
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
+ + K+F+GGL + R F +G V D V+ D+ TGR RGFGF++F++E A
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 91
Query: 169 VLHK-SFHDLNGKQVEVKRA 187
+ + +LNG+ + V A
Sbjct: 92 AISEMDGKELNGRHIRVNPA 111
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 3 SDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDA 62
S +G +FI + + L E FS++G +L+ V + TG+ +G+GFV F A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQA 191
Query: 63 VLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPT 122
++ ++G ++ K+ F I RA R ++V LP
Sbjct: 192 AIDK---LNGMLMNDKQVFV--GHFIRRQERARDENTPTP-------RFTNVYVKNLPKE 239
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
+ E++ R+ F +G ++ VVM DQ +G R FGF++F+ +A + K
Sbjct: 240 IGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEK 288
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD-----PAVLDA 62
+++G I E L+E F+ G V + ++R++ + +GFV + D A+L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILS- 110
Query: 63 VLEDKHVIDGRTVDAKRAFS---REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
L +H+ G+ + A++ RED IFVG L
Sbjct: 111 -LNGRHLF-GQPIKVNWAYASGQREDTSSHF----------------------NIFVGDL 146
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED----AVDRVLHK 172
P +T+ F Y +D VM+DQ TGR RGFGF+SF N+ A+D + K
Sbjct: 147 SPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+F+G +S + + L FS Y + VM ++ TG+ RGFGFV F + +++
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE- 199
Query: 68 HVIDGRTVDAKR---------AFSREDQQ-------ISVTSRAXXXXXXXXXXXXXXVRT 111
I G+ + +++ A S ED+Q + +TS +
Sbjct: 200 --ITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTS-GDGKDTTNGEAPENNAQY 256
Query: 112 KKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN--EDAVDRV 169
++VG L P +++ ++F S G V+ + R +GFGF+ + E A+
Sbjct: 257 TTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHVEAALAIQ 312
Query: 170 LHKSFHDLNGKQVEV 184
+ + L+G+Q++
Sbjct: 313 MGNTHSYLSGRQMKC 327
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD-----PAVLDA 62
+++G I E L+E F+ G V + ++R++ + +GFV + D A+L
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILS- 110
Query: 63 VLEDKHVIDGRTVDAKRAFS---REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGL 119
L +H+ G+ + A++ RED IFVG L
Sbjct: 111 -LNGRHLF-GQPIKVNWAYASGQREDTSSHF----------------------NIFVGDL 146
Query: 120 PPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED----AVDRVLHK 172
P +T+ F Y +D VM+DQ TGR RGFGF+SF N+ A+D + K
Sbjct: 147 SPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNE-DAVDRVLH 171
+++VG L PT T++ R+ F YG+V D +VM D+ T R RGFGF+++ + +A V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 172 KSFHDLNGKQVEVK 185
+LNG++V VK
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
++++G +S T +D L+E FS YG+V++ VMR++ T + RGFGFV +S + +A +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 66 -DKHVIDGRTVDAK 78
D ++GR V K
Sbjct: 64 MDGKELNGRRVSVK 77
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
+ + KIFVGG+ + E R+ F YG V D ++ D+ TGR RGF F++F + +
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 169 VLHKSFHDLNGKQVEVKRA 187
+ DL+G+++ V A
Sbjct: 91 AMQLDGQDLHGRRIRVNYA 109
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVLE 65
K+F+GGIS+ T+E L+E FS YG+V++ ++ ++ TG+ RGF FV F S +A+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 66 DKHVIDGRTV 75
D + GR +
Sbjct: 95 DGQDLHGRRI 104
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M + + F+GG++W TN++ L+ FS +GDV+++ ++ ++ +G+ RGFGFV F D +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 61 DAVLED 66
+E+
Sbjct: 61 RDAIEE 66
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV 166
+ FVGGL +E ++ F +G V D ++ D+ +GR RGFGF++F +E A+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 25/188 (13%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++GG+ +E+ L E F G V+N V +++ T + +GF+ + D ++
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 68 HVID--GRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTE 125
++I G+ + +A S++ + + V + +F+G L P + E
Sbjct: 87 NMIKLHGKPIRVNKA-SQDKKSLDVGA--------------------NLFIGNLDPDVDE 125
Query: 126 EKFRQYFESYGHV-TDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVE 183
+ F ++G + ++ +M D +TG RGFGFIS+D+ +A D + + L+ +Q+
Sbjct: 126 KLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQIT 185
Query: 184 VKRALPKD 191
V A KD
Sbjct: 186 VSYAYKKD 193
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 37/185 (20%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD---PAVLDAVL 64
++ G I E L+E F++ G + + ++R+ + +GFV + D ++ L
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTL 120
Query: 65 EDKHVIDGRTVDAKRAFS---REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+H+ G+ + A++ RED IFVG L P
Sbjct: 121 NGRHIF-GQPMKVNWAYATGQREDTSSHF----------------------NIFVGDLSP 157
Query: 122 TLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQ 181
+T+ F ++ +D VM+DQ TGR RGFGF+SF N+ + +++NGK
Sbjct: 158 EVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDA----QTAINEMNGKW 213
Query: 182 VEVKR 186
V ++
Sbjct: 214 VSSRQ 218
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVL 64
G +FI + + L E FS +G +L+ V + +G+ +G+GFV + +D A A+
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAI- 190
Query: 65 EDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLT 124
DK ++G ++ D+Q+ V V+ ++V L +L+
Sbjct: 191 -DK--LNGMLLN--------DKQVYV---GPFVHKLQRDPSGEKVKFTNVYVKNLSESLS 236
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED----AVDRVLHKSFHD 176
+E+ + F +G T V+M D G+ +GFGF++F+N D AVD + K+F D
Sbjct: 237 DEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDD 291
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++G + + +L E F+ G V++ V R+ T + G+G+V ++ P
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQ--------- 97
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
DA RA + E +++ RA IF+ L ++ +
Sbjct: 98 --------DASRALN-ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKA 148
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
+ F ++G + V D +G+ +G+GF+ +D ++A + K + LN KQV V
Sbjct: 149 LHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 6 GKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVL 64
G +FI + + L E FS +G +L+ V + +G+ +G+GFV + +D A A+
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAI- 190
Query: 65 EDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLT 124
DK ++G ++ D+Q+ V V+ ++V L +L+
Sbjct: 191 -DK--LNGMLLN--------DKQVYV---GPFVHKLQRDPSGEKVKFTNVYVKNLSESLS 236
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNED----AVDRVLHKSFHD 176
+E+ + F +G T V+M D G+ +GFGF++F+N D AVD + K+F D
Sbjct: 237 DEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDD 291
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L++G + + +L E F+ G V++ V R+ T + G+G+V ++ P
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQ--------- 97
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
DA RA + E +++ RA IF+ L ++ +
Sbjct: 98 --------DASRALN-ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKA 148
Query: 128 FRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK-SFHDLNGKQVEV 184
+ F ++G + V D +G+ +G+GF+ +D ++A + K + LN KQV V
Sbjct: 149 LHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD-PAVL 60
D+ K+F+G ++W T D L+ +F +G V++ +V+ E G+ +G+GF+ F D + +
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
A+ K +IDGRT + A
Sbjct: 68 RALQNSKPIIDGRTTNCNLA 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 110 RTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
R KIFVG L T + R+YFE +G V D V+ + GR +G+GFI+F + + R
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRA 69
Query: 170 LHKSFHDLNGKQVEVKRA 187
L S ++G+ A
Sbjct: 70 LQNSKPIIDGRTTNCNLA 87
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AV 59
+D+ K+++GG+ W+T + L+ +F +GD+++ +++ ++ TG+ G+GFV F D +
Sbjct: 47 VDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESA 106
Query: 60 LDAVLEDKHVIDGRTVDAKRAF 81
A K VIDGR A+
Sbjct: 107 TRACQNPKPVIDGREAKCNLAY 128
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 110 RTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
R KI+VGGLP E R YFE +G + V ++ D+ TGR G+GF++F + ++ R
Sbjct: 50 RYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRA 109
Query: 170 LHKSFHDLNGKQVEVKRA 187
++G++ + A
Sbjct: 110 CQNPKPVIDGREAKCNLA 127
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD 61
DS Q +F+ G+ WDT + LK F YG++ SV+ +K+TG+ +GFGFV+F
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 62 AVLED-KHVIDGRTVDA--KRAFS----REDQQ 87
A L++ + + RTV R F+ RE QQ
Sbjct: 219 AALKNPEKRMYNRTVSCLPARPFNSGKPREQQQ 251
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
KLFIGG+SW +E LK+ FS++G+V + +K +G+ RGFGFV F++ DA L
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG--DA-LSA 98
Query: 67 KHVIDGR 73
K +DG+
Sbjct: 99 KDAMDGK 105
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNE 163
K+F+GGL ++ E+ + F S+G V +V + YD+ +GR RGFGF+ F E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KIFVGGL P+ E ++ F S+G + D VV+ D+ +G RGFGF+++D+ + + +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 173 SFH-DLNGKQVEVKRA 187
+ +L+G+ + V A
Sbjct: 97 MQNKELDGRIIGVHPA 112
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
K+F+GG+S T+ + LKE F ++G +++ V+ ++ +G RGFGFV + V + ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 66 -DKHVIDGRTV 75
+DGR +
Sbjct: 97 MQNKELDGRII 107
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+L++ I + +L + F +G V++ V R TG+ RG G+V +++
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGS---INSAKIA 165
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTK-KIFVGGLPPTLTE 125
+DG V + R ++ +R ++ K++VG LP
Sbjct: 166 IASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 225
Query: 126 EKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVK 185
+ R +F +G + V++D+ TGR R F F+SF + + D L NG Q E +
Sbjct: 226 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEGR 280
Query: 186 RALPKD 191
R + ++
Sbjct: 281 RIIVRE 286
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M Q K+++G + W T D L+ HFS +G +++T V+ ++ TG+ R F F+ F+
Sbjct: 207 MYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEER 266
Query: 61 DAVLEDKHVIDGRTVDAKRAFSRE 84
DA L +G + +R RE
Sbjct: 267 DAALS----FNGTQYEGRRIIVRE 286
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++FV L T++ RQ F +G + + ++ D T RP+GFGFI+FD+ED K
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA----RK 63
Query: 173 SFHDLNGKQVE 183
+ L+GK V+
Sbjct: 64 ALKSLDGKIVD 74
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 5 QGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVL 64
+ K+++ G+ W T + L +F +G+++ V+ + T + +GFGFV F +
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 65 ED-KHVIDGRTVDAKRAF 81
E+ H IDGRTV+ K A+
Sbjct: 68 ENPNHTIDGRTVNCKLAY 85
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 110 RTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRV 169
R KI+V GLP E YFE +G + V+ D T R +GFGF++F ++ R
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 170 LHKSFHDLNGKQVEVKRA 187
H ++G+ V K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
LF+G +S T ED L+E S YG + N ++R TG RG+GFV + + ED
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 68 H--VIDGRTV 75
H +IDGR +
Sbjct: 126 HHSLIDGREI 135
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLD-AVLE- 65
LF+ GIS+ + E+ L + FS YG VL V+ +K +P+GF +V FS + A+LE
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 66 DKHVIDGRTV 75
+ ++DGR V
Sbjct: 83 NAQLVDGRVV 92
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+++IG I ++L + +G V VM +K +G+ R FGF +AV+E
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXX---XXXXXXXXXXVRTK-KIFVGGLPPT 122
++G TV+ + + ++++T + V + K++VG L T
Sbjct: 137 ---LNGNTVEGR------EIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKT 187
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR---VLHKSFHDLNG 179
+T+E F G V V T + GFGF++F +E+ V+ L+ S L G
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSL--LEG 245
Query: 180 KQVEVKRA 187
+++ V +A
Sbjct: 246 QKIRVNKA 253
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 112 KKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH 171
+++++G +P T+T E+ + E +G V V VMYD+ +GR R FGF + + + + V+
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 172 KSFHDLNGKQVE 183
K LNG VE
Sbjct: 136 K----LNGNTVE 143
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+++IG I ++L + +G V VM +K +G+ R FGF +AV+E
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 67 KHVIDGRTVDAKRAFSREDQQISVTSRAXXXX---XXXXXXXXXXVRTK-KIFVGGLPPT 122
++G TV+ + + ++++T + V + K++VG L T
Sbjct: 137 ---LNGNTVEGR------EIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKT 187
Query: 123 LTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR---VLHKSFHDLNG 179
+T+E F G V V T + GFGF++F +E+ V+ L+ S L G
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSL--LEG 245
Query: 180 KQVEVKRA 187
+++ V +A
Sbjct: 246 QKIRVNKA 253
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 112 KKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH 171
+++++G +P T+T E+ + E +G V V VMYD+ +GR R FGF + + + + V+
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 172 KSFHDLNGKQVE 183
K LNG VE
Sbjct: 136 K----LNGNTVE 143
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
D+ K+++GG+ W T ++ L F +G++++ +V+ ++ T + +G+GFV F D
Sbjct: 8 FDTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESA 67
Query: 61 DAVLEDKH-VIDGRTVDAKRAF 81
+D + I+GR + K AF
Sbjct: 68 TRACKDPNPTIEGRITNCKLAF 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
KI+VGGLP T +E +F+ +G + V V+ D+ T R +G+GF++F + ++ R
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 173 SFHDLNGKQVEVKRAL 188
+ G+ K A
Sbjct: 74 PNPTIEGRITNCKLAF 89
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLN----TSVMREKNTGKPRGFGFVVFSDPA- 58
D LF+G I + L+E +YG V N T V N RG+ F+ FS +
Sbjct: 292 DNDTLFVGNICKIWTPEALREKLKHYG-VENMDDITLVEDSNNVNMNRGYAFLEFSSRSD 350
Query: 59 VLDA--VLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFV 116
+DA L K V+ G AK +F+ D + + + K IF+
Sbjct: 351 AMDAHKRLVKKDVMFGVEKPAKVSFT--DSFLDLEDEIM-------------AQVKTIFI 395
Query: 117 GGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAV 166
GL P+ EE+ R + YG + V + + + R + FGF++FD +A
Sbjct: 396 DGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAA 445
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
M Q K+++G + W T D L+ HFS +G +++T V+ ++ TG+ R F F+ F+
Sbjct: 208 MYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEER 267
Query: 61 DAVLEDKHVIDGRTVDAKRAFSRE 84
DA L +G + +R RE
Sbjct: 268 DAALS----FNGTQYEGRRIIVRE 287
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 10/187 (5%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVM-REKNTGKPRGFGFVVFSDPAVLDAVLE 65
+L++ I + +L + F +G V++ V+ R TG+ RG G+V +++
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGS---INSAKI 165
Query: 66 DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTK-KIFVGGLPPTLT 124
+DG V + R ++ +R ++ K++VG LP
Sbjct: 166 AIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQ 225
Query: 125 EEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEV 184
+ R +F +G + V++D+ TGR R F F+SF + + D L NG Q E
Sbjct: 226 PDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEG 280
Query: 185 KRALPKD 191
+R + ++
Sbjct: 281 RRIIVRE 287
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
+ DQ +F + E + E FS G V + ++ ++N+ + +G G++ F D +V
Sbjct: 164 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 223
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
A+ + G+ V K + + ++ S ++ +K++VG L
Sbjct: 224 MAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPA----------DRKLYVGNLH 273
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF 160
++E + RQ FE++G V V + D TG+ +GFGFI F
Sbjct: 274 FNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGD-VLNTSVMRE-KNTGKPRGFGFVVFSDPA 58
+ + +LFIG I + ED+ ++ + G V N ++++ NT + RGF FV++ + A
Sbjct: 191 LSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNA 250
Query: 59 VLDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGG 118
D + + +D+ F E +VT + K ++V
Sbjct: 251 CADYSRQ-------KMIDSN--FKLEGNAPTVT---WADPKSSPEHSAAAAQVKALYVKN 298
Query: 119 LPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDL 177
+P + E+ ++ F+ +G VT +V G R FGF+ + + A+ V +++
Sbjct: 299 IPENTSTEQLKELFQRHGEVTKIVT--PPGKGGKRDFGFVHYAERSSALKAVKDTERYEV 356
Query: 178 NGKQVEVKRALPK 190
NG+ +EV A P+
Sbjct: 357 NGQPLEVVLAKPQ 369
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++F+GGLP + EE R E G + +V +M D+++G +G+ F++F +D V K
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKD----VAQK 172
Query: 173 SFHDLNGKQVEVK 185
+ +L+ K+ + K
Sbjct: 173 AIEELHSKEFKGK 185
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGD-VLNTSVMRE-KNTGKPRGFGFVVFSDPA 58
+ + +LFIG I + ED+ ++ + G V N ++++ NT + RGF FV++ + A
Sbjct: 191 LSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNA 250
Query: 59 VLDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGG 118
D + + +D+ F E +VT + K ++V
Sbjct: 251 CADYSRQ-------KMIDSN--FKLEGNAPTVT---WADPKSSPEHSAAAAQVKALYVKN 298
Query: 119 LPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDL 177
+P + E+ ++ F+ +G VT +V G R FGF+ + + A+ V +++
Sbjct: 299 IPENTSTEQLKELFQRHGEVTKIVT--PPGKGGKRDFGFVHYAERSSALKAVKDTERYEV 356
Query: 178 NGKQVEVKRALPK 190
NG+ +EV A P+
Sbjct: 357 NGQPLEVVLAKPQ 369
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++F+GGLP + EE R E G + +V +M D+++G +G+ F++F +D V K
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKD----VAQK 172
Query: 173 SFHDLNGKQVEVK 185
+ +L+ K+ + K
Sbjct: 173 AIEELHSKEFKGK 185
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
D G+LF+ G+ + T E++L EHFS +GD+ ++ +K+T RG FV++ P
Sbjct: 225 DAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMA 284
Query: 64 LE--DKHVIDGRTV 75
++ DK GRT+
Sbjct: 285 MDKLDKLPFQGRTL 298
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 41/189 (21%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSD---PAVLDAVL 64
++ G I E L+E F++ G + + ++R+ + +GFV + D ++ L
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTL 120
Query: 65 EDKHVIDGRTVDAKRAFS---REDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPP 121
+H+ G+ + A++ RED IFVG L P
Sbjct: 121 NGRHIF-GQPMKVNWAYATGQREDTSSHF----------------------NIFVGDLSP 157
Query: 122 TLTEEKFRQYFESYGHVT----DVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDL 177
+T+ F ++ + D VM+DQ TGR RGFGF+SF N+ + +++
Sbjct: 158 EVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDA----QTAINEM 213
Query: 178 NGKQVEVKR 186
NGK V ++
Sbjct: 214 NGKWVSSRQ 222
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF 54
D Q +F+ G WDT ++ LK F +YG++ SV+ +K+TG+ +G+GFV+F
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
L+IG + +E+ L F G+ V+R K G G+GF+ F + A + L+
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 68 HVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLTEEK 127
+ +++AF Q+ R +FVG L P +T+
Sbjct: 142 N--GAPMPSSEQAFRLNWAQLGAGERRQAEGPE-----------HTVFVGDLAPDVTDHM 188
Query: 128 FRQYFES-YGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGK 180
+ F++ Y V V+ D+ TGR +G+GF+ F +E R + ++NG+
Sbjct: 189 LTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAM----TEMNGQ 238
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLH- 171
K+++GGL P E + F S+ VT+ VM ++ TGR RG+GF++F +ED+ + +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 172 KSFHDLNGKQVEVKRA 187
+ +LNG + V A
Sbjct: 92 MNGQELNGFNISVNVA 107
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVL 60
D K+F+ G+ W+T + L F YG++ +V+ +K TGK +GFGFV+F +
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
+A+ E K I RT + A
Sbjct: 160 EALKEPKKRILNRTATCQLA 179
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V +KIFV GLP T E FE YG + + V+ D+ TG+ +GFGF+ F
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKE 160
Query: 169 VLHK 172
L +
Sbjct: 161 ALKE 164
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVL 60
D K+F+ G+ W+T + L F YG++ +V+ +K TGK +GFGFV+F +
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 61 DAVLEDKHVIDGRTVDAKRA 80
+A+ E K I RT + A
Sbjct: 160 EALKEPKKRILNRTATCQLA 179
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V +KIFV GLP T E FE YG + + V+ D+ TG+ +GFGF+ F
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKE 160
Query: 169 VLHK 172
L +
Sbjct: 161 ALKE 164
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 5 QGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVL 64
+ KLF+G +SW + L F GDV+ V+ + +TG+ RG+GFV +S A ++ L
Sbjct: 176 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Query: 65 E--DKHVIDGRTVDAKRA 80
E D ++GR + A
Sbjct: 236 ESLDGFELEGRAIRVNLA 253
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
+ DQ +F I+ E + E FS G V + ++ ++ + + RG G+V F D +V
Sbjct: 178 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 237
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
A+ + G+ V K + + ++ S T+ A ++++VG L
Sbjct: 238 MAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGG----ARRLYVGNLH 293
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRVLHKSFHDLNG 179
++E+ R+ FES+G V V V D+ TG +GFGF+ F EDA ++ +LNG
Sbjct: 294 INMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDA------RNALNLNG 346
Query: 180 KQVEV 184
Q+E+
Sbjct: 347 -QLEI 350
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 2 DSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDP-AVL 60
+ DQ +F I+ E + E FS G V + ++ ++ + + RG G+V F D +V
Sbjct: 227 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 286
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
A+ + G+ V K + + ++ S T+ A ++++VG L
Sbjct: 287 MAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGG----ARRLYVGNLH 342
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDAVDRVLHKSFHDLNG 179
++E+ R+ FES+G V V V D+ TG +GFGF+ F EDA ++ +LNG
Sbjct: 343 INMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDA------RNALNLNG 395
Query: 180 KQVEV 184
Q+E+
Sbjct: 396 -QLEI 399
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 1 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVL 60
+ + +LFIG I + ED+ ++ + G T NT + RGF FV++ + A
Sbjct: 171 LSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGDPT------NTTRNRGFAFVLYYNNACA 224
Query: 61 DAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLP 120
D + + +D+ F E +VT + K ++V +P
Sbjct: 225 DYSRQ-------KMIDSN--FKLEGNAPTVT---WADPKSSPEHSAAAAQVKALYVKNIP 272
Query: 121 PTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVLHKSFHDLNG 179
+ E+ ++ F+ +G VT +V G R FGF+ + + A+ V +++NG
Sbjct: 273 ENTSTEQLKELFQRHGEVTKIVT--PPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNG 330
Query: 180 KQVEVKRALPK 190
+ +EV A P+
Sbjct: 331 QPLEVVLAKPQ 341
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 113 KIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHK 172
++F+GGLP + EE R E G + +V +M D+++G +G+ F++F +D V K
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKD----VAQK 152
Query: 173 SFHDLNGKQVEVK 185
+ +L+ K+ + K
Sbjct: 153 AIEELHSKEFKGK 165
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 112 KKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF-DNEDAVDRVL 170
+ +FVG +P TEE+ R+ G V ++ D+ TG+P+G+GF + D E A+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 171 HKSFHDLNGKQVEV 184
+ +++NG+Q+ V
Sbjct: 69 NLQSYEINGRQLRV 82
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 5 QGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVL 64
+ KL++ G+S+ T ED L++ F +G++++ +++ +K +P+GF F+ + +
Sbjct: 76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
Query: 65 EDKH--VIDGRTVDAKRAFSREDQ 86
+ H +DGR + + A +R D
Sbjct: 136 QGMHGKFLDGRVIFVEEAKTRSDM 159
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 9 FIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVF-SDPAVLDAVL 64
F+ G+ DT+E L + FS +G+V+++ ++ +++TGK R FGFV F + ++ DA++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLE- 65
KLF+ + W + + + E F G V N ++R+K+ GK RGF FV + A ++
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 66 -DKHVIDGRTVDAKRAFSREDQQISVTSRAXXXXXXXXXXXXXXVRTKKIFVGGLPPTLT 124
D + GR + +F+R ++ + S K++V L
Sbjct: 155 FDTFQVSGRIISV--SFARRFKKPTPKSPNDLPSPAPGDTR------HKLYVSNLAWKAR 206
Query: 125 EEKFRQYFES--YGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQV 182
R+ F + + V+ VV D GR G+GF+SF + + + K LNGK++
Sbjct: 207 STHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEAENAITK----LNGKEI 261
>AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:26080501-26082984 REVERSE LENGTH=220
Length = 220
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V + +FVG + T E+ +Q+F++ G V V ++ D+ G+P+GF ++ F +AV
Sbjct: 89 VDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQE 147
Query: 169 VLHKSFHDLNGKQVEV 184
L + +L+G+Q++V
Sbjct: 148 ALQLNESELHGRQLKV 163
>AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding
protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227
Length = 227
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V ++ I+VG + T E+ +Q+F+S G V V ++ D+ G+P+GF ++ F +AV
Sbjct: 100 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQN 158
Query: 169 VLHKSFHDLNGKQVEV 184
L + +L+G+Q++V
Sbjct: 159 SLILNESELHGRQIKV 174
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 8 LFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDK 67
+++GGI +D E L FS YG++++ +++R+K TGK +GF F+ + D +++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 68 H--VIDGRT--VDAKRAFSREDQQISVTSR 93
+ ++ GRT VD A+ + +++ T R
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEETRR 127
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 7 KLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLED 66
+LF G + + N+D L + F+ + V+R+K TGK +G+GFV F +PA L A L++
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 4 DQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAV 63
D G+LF+ + + E++L EHFS +G + ++ +K T + RG ++++ P
Sbjct: 292 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 351
Query: 64 LE--DKHVIDGRTVDAKRAFSRE--DQQISVTS 92
+E D GR + A RE D+Q++ TS
Sbjct: 352 MEELDNSSFQGRLLHILPAKHRETSDKQVNDTS 384
>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779760-20781241 FORWARD LENGTH=265
Length = 265
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V ++ I+VG + T E+ +Q+F+S G V V ++ D+ G+P+GF ++ F +AV
Sbjct: 138 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQN 196
Query: 169 VLHKSFHDLNGKQVEV 184
L + +L+G+Q++V
Sbjct: 197 SLILNESELHGRQIKV 212
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 111 TKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDN-EDA 165
+ ++FV GL T EK + F S+G + D V+ D+++GR +GFGF+++ EDA
Sbjct: 33 SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDA 88
>AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |
chr5:20779346-20781241 FORWARD LENGTH=142
Length = 142
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 109 VRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDR 168
V ++ I+VG + T E+ +Q+F+S G V V ++ D+ G+P+GF ++ F +AV
Sbjct: 15 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQN 73
Query: 169 VLHKSFHDLNGKQVEV 184
L + +L+G+Q++V
Sbjct: 74 SLILNESELHGRQIKV 89