Miyakogusa Predicted Gene

Lj0g3v0310189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0310189.1 Non Chatacterized Hit- tr|I1KHA8|I1KHA8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.05,0,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; PORR,Plant organelle RNA
recognition domain; seg,NU,CUFF.20935.1
         (388 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79120.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   460   e-130
AT4G01037.1 | Symbols: WTF1, AtWTF1 | Ubiquitin carboxyl-termina...   145   5e-35
AT5G21970.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   140   1e-33
AT4G33495.1 | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydrol...   135   6e-32
AT5G48040.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   124   1e-28
AT3G63090.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   116   3e-26
AT1G06440.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   114   1e-25
AT5G45790.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   112   4e-25
AT3G58520.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   112   4e-25
AT3G58520.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   112   6e-25
AT1G71850.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   110   2e-24
AT5G45790.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   108   6e-24
AT4G24320.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   106   2e-23
AT2G31290.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   102   4e-22
AT2G31290.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...   102   4e-22
AT4G08940.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...    92   5e-19
AT5G62990.1 | Symbols: emb1692 | Ubiquitin carboxyl-terminal hyd...    77   2e-14
AT2G39120.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase ...    65   6e-11

>AT1G79120.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr1:29767314-29768555 REVERSE
           LENGTH=413
          Length = 413

 Score =  460 bits (1183), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/366 (60%), Positives = 282/366 (77%), Gaps = 7/366 (1%)

Query: 22  IRHKSSGGR-RPKKKTYHRVPELDRVMELRKKPLMILQLKTLIQSQPRNSPLFLRDLEKN 80
           +RHKS GG  RPK+K YHRV +LD+ ++L KKP +ILQLK++IQ+Q   S L LRDLEK+
Sbjct: 46  VRHKSGGGGWRPKQKVYHRVHDLDKAIDLNKKPSLILQLKSIIQAQKHGS-LLLRDLEKH 104

Query: 81  VGFVRKWDFMALIERHPTIFRVAGA---PPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNL 137
           VGFV KW+ MA IE++PTIF V G    PP V LT+K              MEP+LV NL
Sbjct: 105 VGFVHKWNLMAAIEKYPTIFYVGGGHKEPPFVMLTEKAKKIAAEESEATESMEPILVNNL 164

Query: 138 RKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDS 197
           RKLLM+ VDCRVPLE +E + + +GLP DF+  LI KY +FF+++ + G+  L LE+WDS
Sbjct: 165 RKLLMMSVDCRVPLEKVEFIQSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLENWDS 224

Query: 198 SLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQL 257
           SLA+TARE RL++EG   ++   D+++V+I++DGN++G  AFK++FP GFRPN  YL++ 
Sbjct: 225 SLAITAREDRLSREGF--SESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEF 282

Query: 258 ERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLP 317
           E+WQK+EFPSPYLNARRFD ADPK+RKR VAV+HELLSLTMEKR+T +QLDAFHSE  LP
Sbjct: 283 EKWQKMEFPSPYLNARRFDAADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLLP 342

Query: 318 SQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCGRRNTDL 377
           S+L+LCLIKHQGIFY+TNKG R TV LKD Y GSNLI+KCPLL F+++FVALCGR+  +L
Sbjct: 343 SRLILCLIKHQGIFYITNKGARGTVFLKDAYAGSNLIEKCPLLLFHDRFVALCGRKEVNL 402

Query: 378 CDSNNS 383
            +   S
Sbjct: 403 SNEMQS 408


>AT4G01037.1 | Symbols: WTF1, AtWTF1 | Ubiquitin carboxyl-terminal
           hydrolase family protein | chr4:451444-453030 REVERSE
           LENGTH=528
          Length = 528

 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 167/335 (49%), Gaps = 16/335 (4%)

Query: 43  LDRVMELRKKPLMILQLKTLIQSQPRNSPLFLRDLEK---NVGFVRKWDFMALIERHPTI 99
            D V++  KK  ++L ++ ++ SQP +  + LR L K   ++G  ++  F+AL+ ++P +
Sbjct: 84  FDSVVQRDKKLKLVLNIRKILVSQP-DRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGV 142

Query: 100 FRVA--GAPP-SVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLETLEL 156
           F +   GA      +T +              +E VLV  LRKL+M+ +D R+ LE +  
Sbjct: 143 FEIVEEGAYSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISH 202

Query: 157 VGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTAREARLAQEGVLNT 216
           +  +LGLP +F + +  +YPQ+F +        L L  WD  LAV+A  A L+++   N 
Sbjct: 203 LKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSA--AELSEDD--NR 258

Query: 217 KPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLEFPSPYLNARRFD 276
               ++R + I R      P   +V  P G   +    +++ +++ +++ SPY +     
Sbjct: 259 TRESEERNLIIDRP-----PKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLR 313

Query: 277 VADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKHQGIFYLTNK 336
               +  K A  VIHELLSLT EKR     L  F  E     QL   LI+H  +FY++ K
Sbjct: 314 SGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLK 373

Query: 337 GVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCG 371
           G R +V L++ Y  S LIDK PL     K  AL  
Sbjct: 374 GERDSVFLREAYRNSELIDKDPLTLVKEKMRALVS 408


>AT5G21970.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr5:7262071-7263420 FORWARD LENGTH=449
          Length = 449

 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 14/240 (5%)

Query: 136 NLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRV-RGRDFLHLED 194
           ++ + LM+ VD ++PL+ +     + GLP DF    +  +PQ F + ++  G ++L L  
Sbjct: 159 HVTRCLMMSVDKKLPLDKIVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGDGEEYLELVS 218

Query: 195 WDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYL 254
           W+ + A+T  E +      L    + + +   +S         AF + FP  ++    Y 
Sbjct: 219 WNPAWAITELEKK-----TLGITEDCEHKPGMLS--------LAFPMKFPPSYKKMYRYR 265

Query: 255 QQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSEC 314
            ++E +QK  + SPY +AR  +    +  KRA+AV+HELLS T+EKRL +  L  F  E 
Sbjct: 266 GKIEHFQKRSYLSPYADARGLEAGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREF 325

Query: 315 FLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALCGRRN 374
            +P +L+   +KH GIFY++ +G R +V L + Y G  LI+KCPL+ +  K +   G R 
Sbjct: 326 VMPQKLMRIFLKHCGIFYVSERGKRFSVFLTEGYEGPELIEKCPLILWKEKLLKFTGYRG 385


>AT4G33495.1 | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr4:16111349-16112578 REVERSE
           LENGTH=409
          Length = 409

 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 41/346 (11%)

Query: 32  PKKKTYHRVPELDRVMELRKKPLMILQLKTLIQSQPRNSPL--FLRDLEKNVGF-VRKWD 88
           PKK+   R    D  ME+ KK   +++  +LI SQP ++     L  L + +G   ++ +
Sbjct: 41  PKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHE 100

Query: 89  FMALIERHPTIFRVAGAPPS----VSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLC 144
             A + + P +F +   P        LT K                P  VT LRKL+M+ 
Sbjct: 101 PGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMS 160

Query: 145 VDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRD----FLHLEDWDSSLA 200
              R+ LE + +   E GLP DFE  +I K+PQFF  R + G +    ++ + + D +L+
Sbjct: 161 NTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFF--RLIDGEETRDKYIEIVEKDPNLS 218

Query: 201 VTA----REARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQ 256
           + A    RE     +G+       D   V+          F+F VNFP GF+    +   
Sbjct: 219 ICAIERVREIEYRTKGI-------DAEDVR----------FSFVVNFPPGFKIGKYFRIA 261

Query: 257 LERWQKLEFPSPYLNARRFDV----ADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHS 312
           + +WQ+L + SPY +   +D+    A  +  KR+VA IHELLSLT+EK++T  ++  F +
Sbjct: 262 VWKWQRLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRN 321

Query: 313 ECFLPSQLLLCLIKHQGIFYLT---NKGVRSTVLLKDTYLGSNLID 355
              LP +L   L++HQGIFY++   N G   TV L++ Y    L++
Sbjct: 322 VMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVE 367


>AT5G48040.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr5:19470461-19471729 FORWARD
           LENGTH=422
          Length = 422

 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 153/338 (45%), Gaps = 31/338 (9%)

Query: 42  ELDRVMELRKKPLMILQLKTLIQSQPR-NSPLF-LRDLEKNVGFVRKWDFMALIERHPTI 99
           ELD V+   K    +  L ++I + P    P+F L      +G  ++    A I R+P I
Sbjct: 44  ELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRGQLGLPQELKLSAFIRRYPNI 103

Query: 100 F-------RVAGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLE 152
           F           + P   LT +             + E  ++  L KLLML  +  + L 
Sbjct: 104 FVEHCYWDSAGTSVPCFGLTRETIDLYYEEVDVSRVNERDVLVRLCKLLMLTCERTLSLH 163

Query: 153 TLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGR-DFLHLEDWDSSLAVTAREARLAQE 211
           +++ +  +LGLP D+ + LI K+P  F++ ++    D L L  WD  LAV+  + R   E
Sbjct: 164 SIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDGLKLIHWDEHLAVSQMQLR---E 220

Query: 212 GVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLEFPSPYLN 271
            V N     D+R              AF V F  GF      ++ L+ WQ+L + SPY++
Sbjct: 221 DVGN-----DER-------------MAFPVKFTRGFGLKRKSIEWLQEWQRLPYTSPYVD 262

Query: 272 ARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKHQGIF 331
           A   D     S KR V V HELL LT+ K+     +        LP +      +H GIF
Sbjct: 263 ASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFTKVFERHPGIF 322

Query: 332 YLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVAL 369
           Y++ K    TV+L++ Y   +LI+K PL+E   KF  +
Sbjct: 323 YISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANM 360


>AT3G63090.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr3:23313617-23314831 FORWARD
           LENGTH=404
          Length = 404

 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 18/242 (7%)

Query: 130 EPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRV--RGR 187
           EP+LV+ L +LLM+  D  +  + L  V  + G P+DF   L+ KYP +F +  +   G+
Sbjct: 139 EPLLVSKLCQLLMMAKDKVISADKLVHVKRDFGFPNDFLMKLVQKYPNYFRLTGLPEEGK 198

Query: 188 DFLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGF 247
            FL L  W+   A +  E R A++  L T              G  + P  + V  P+GF
Sbjct: 199 SFLELVSWNPDFAKSKIELR-AEDETLKT--------------GVRIRP-NYNVKLPSGF 242

Query: 248 RPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQL 307
                  +    W + ++ SPY +    D A  +  KR V V+HELLSL++ KR+    L
Sbjct: 243 FLRKEMREWTRDWLEQDYISPYEDVSHLDQASKEMEKRTVGVVHELLSLSLLKRVPVPTL 302

Query: 308 DAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFV 367
             F  E    +       +H GIFYL+ KG   T +L++ Y    L+D+ PLL   +KF+
Sbjct: 303 GKFCDEFRFSNAFSSVFTRHSGIFYLSLKGGIKTAVLREAYKDDELVDRDPLLAIKDKFL 362

Query: 368 AL 369
            L
Sbjct: 363 RL 364


>AT1G06440.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr1:1963733-1964905 REVERSE LENGTH=390
          Length = 390

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 167/368 (45%), Gaps = 42/368 (11%)

Query: 39  RVPELDRVMELRKKPLMILQLKTLIQSQPRNSP-----LFLRDLEKNVGFVRKWDFMALI 93
           R P  +++M+  K  L ++ ++ L  + P   P      FL  L + +   R     + +
Sbjct: 36  RDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLSRLSQKLHLNR--GAASFL 93

Query: 94  ERHPTIFRV----AGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRV 149
            ++P IF V      A P   LTD                  ++V  L +LL + +   +
Sbjct: 94  RKYPHIFHVLYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDRLVRLLSMSISKSI 153

Query: 150 PLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTAREARLA 209
           PL  +  V  ELGLP DFE+ +I+K P  F +      +   LE       V   E RL 
Sbjct: 154 PLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILE------LVQEEEKRLE 207

Query: 210 QEGVLNTKPNQDQRKVKISRDGNYVG----PFAFKVNFPAGFRPNVGYLQQLERWQKLEF 265
            E  +     +  R V+ S++   V      F+FK ++P G R +  +  +++ WQ+L +
Sbjct: 208 FEAAV-----EKWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLPY 262

Query: 266 PSPYLNARRFDVADPKSR-------KRAVAVIHELLSLTMEKRLTSSQLDAFHSECF-LP 317
             PY +     V   KSR       KRAVA+ HE L+LT+EK +   ++  F  +CF + 
Sbjct: 263 VGPYEDM----VGKKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEKISHFR-KCFGID 317

Query: 318 SQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF--VALCGRRNT 375
             +    + H G+FY++ KG R TV L++ Y    LID  P+ +   K   + L G R+ 
Sbjct: 318 LNIRDLFLDHPGMFYVSTKGKRHTVFLREAYERGRLIDPNPVYDARRKLLDLVLLG-RHA 376

Query: 376 DLCDSNNS 383
            L +S N+
Sbjct: 377 ALSESGNT 384


>AT5G45790.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr5:18572345-18573664 FORWARD
           LENGTH=439
          Length = 439

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 158/347 (45%), Gaps = 41/347 (11%)

Query: 39  RVPELDRVMELRKKPLMILQLKTLIQSQPRNSPLFLR---------DLEKNVGFVRKWDF 89
           R  +LD+++   +K  +IL++  L+ S+ R   + L+          L  NVG       
Sbjct: 70  RDHQLDKIIPQIRKLNIILEISKLMSSKKRGPFVSLQLMSRWKNLVGLNVNVG------- 122

Query: 90  MALIERHPTIFRVAGAPPSVSL----TDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCV 145
            A I ++P  F +   P S +L    T+K               E   V  ++KLL+L  
Sbjct: 123 -AFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSK 181

Query: 146 DCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTARE 205
              + +  L L+  ELGLP DF + ++AKY   F   R+   + L L D D      A+ 
Sbjct: 182 HGVLRVHALRLIRKELGLPEDFRDSILAKYSSEF---RLVDLETLELVDRDDESLCVAK- 237

Query: 206 ARLAQEGVLNTKPNQDQRKVKISRD--GNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKL 263
                         ++ R+V+        +   +AF ++ P GF+   G+ ++L+ WQ++
Sbjct: 238 -------------VEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRV 284

Query: 264 EFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
            +  PY + +       +  KR VAVIHELLSLT+EK +   +L  F  +  +   +   
Sbjct: 285 PYVKPY-DRKEISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREV 343

Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALC 370
           ++KH GIFY++ KG   T+ L++ Y    LI+  P+     K + L 
Sbjct: 344 ILKHPGIFYVSTKGSSQTLFLREAYSKGCLIEPNPIYNVRRKMLDLV 390


>AT3G58520.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr3:21643921-21645277 REVERSE
           LENGTH=418
          Length = 418

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 129/283 (45%), Gaps = 13/283 (4%)

Query: 90  MALIERHPTIFRV-----AGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLC 144
           +  + R+PT+F         + P   LTD                E   V  L ++LM+ 
Sbjct: 88  LRFLRRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRVLMMM 147

Query: 145 VDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFA-IRRVRGRDFLHLEDWDSSLAVTA 203
               V L +L  +  +LGLP ++E+ L+ KYP  F  ++   G   L L  W    A +A
Sbjct: 148 RSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEFAFSA 207

Query: 204 REARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKL 263
            + R     V      ++ R  +  R  + +    F ++FP G+         ++ +QKL
Sbjct: 208 LQKRNEDNDV----SGEESRYREFKRGQSTL---TFPMSFPRGYGAQKKVKAWMDEFQKL 260

Query: 264 EFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLC 323
            + SPY +    D       KRAVAV+HELLSLT+ K+   + L +  +E  +P +    
Sbjct: 261 PYISPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRL 320

Query: 324 LIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
             ++ GIFYL+ K   +TV+LK+ Y    L+D  PL    +KF
Sbjct: 321 FTRYPGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKF 363


>AT3G58520.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr3:21643921-21645277 REVERSE
           LENGTH=406
          Length = 406

 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 127/279 (45%), Gaps = 13/279 (4%)

Query: 94  ERHPTIFRV-----AGAPPSVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCR 148
           +R+PT+F         + P   LTD                E   V  L ++LM+     
Sbjct: 80  KRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRVLMMMRSKT 139

Query: 149 VPLETLELVGAELGLPSDFEECLIAKYPQFFA-IRRVRGRDFLHLEDWDSSLAVTAREAR 207
           V L +L  +  +LGLP ++E+ L+ KYP  F  ++   G   L L  W    A +A + R
Sbjct: 140 VSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEFAFSALQKR 199

Query: 208 LAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLEFPS 267
                V      ++ R  +  R  +      F ++FP G+         ++ +QKL + S
Sbjct: 200 NEDNDV----SGEESRYREFKRGQS---TLTFPMSFPRGYGAQKKVKAWMDEFQKLPYIS 252

Query: 268 PYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKH 327
           PY +    D       KRAVAV+HELLSLT+ K+   + L +  +E  +P +      ++
Sbjct: 253 PYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRY 312

Query: 328 QGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKF 366
            GIFYL+ K   +TV+LK+ Y    L+D  PL    +KF
Sbjct: 313 PGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKF 351


>AT1G71850.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr1:27024875-27026287 REVERSE
           LENGTH=470
          Length = 470

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 35/342 (10%)

Query: 43  LDRVMELRKKPLMILQLKTLIQSQPRNS-PLFLRDLEKNVGFV--RKWDFMALIERHPTI 99
           LD  +E  K    +L +K LI+S+P  S P+ +   +K+   V  R  +F   I   P++
Sbjct: 37  LDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIEF---IRSFPSV 93

Query: 100 FRV-----AGAPPSVSLTDK--XXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVDCRVPLE 152
           F+       G  P +SLT +                 +  L   L KLLM+    ++PLE
Sbjct: 94  FQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINKIPLE 153

Query: 153 TLELVGAELGLPSDFEECLIAKYPQFFAI--RRVRG-RDFLHLEDWDSSLAVTAREARLA 209
            L+L+  +LGLP D+ E ++ ++P +F +   ++RG    L L  W +  AV+  E    
Sbjct: 154 ILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELELVCWSNEHAVSVLE---- 209

Query: 210 QEGVLNTKPNQDQRKVKISRDGNYV--GPFAFKVNFPAGFRPNVGYLQQLERWQKLEFPS 267
                        +K +  R G Y      AF + F  GF  +    + ++ WQKL + S
Sbjct: 210 -------------KKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYIS 256

Query: 268 PYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIKH 327
           PY NA        +S K A AV+HE+++L + K++    +        L S+    L  H
Sbjct: 257 PYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNH 316

Query: 328 QGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVAL 369
            GIFYL++K    TV+L+D Y    LI+   L+   N+++ L
Sbjct: 317 PGIFYLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKL 358


>AT5G45790.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr5:18572473-18573664 FORWARD
           LENGTH=354
          Length = 354

 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 20/283 (7%)

Query: 91  ALIERHPTIFRVAGAPPSVSL----TDKXXXXXXXXXXXXXLMEPVLVTNLRKLLMLCVD 146
           A I ++P  F +   P S +L    T+K               E   V  ++KLL+L   
Sbjct: 38  AFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSKH 97

Query: 147 CRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWDSSLAVTAREA 206
             + +  L L+  ELGLP DF + ++AKY   F   R+   + L L D D      A+  
Sbjct: 98  GVLRVHALRLIRKELGLPEDFRDSILAKYSSEF---RLVDLETLELVDRDDESLCVAK-- 152

Query: 207 RLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAGFRPNVGYLQQLERWQKLEFP 266
                 V   +  + + K     + NY    AF ++ P GF+   G+ ++L+ WQ++ + 
Sbjct: 153 ------VEEWREVEYREKWLSKFETNY----AFPIHLPTGFKIEKGFREELKNWQRVPYV 202

Query: 267 SPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSECFLPSQLLLCLIK 326
            PY + +       +  KR VAVIHELLSLT+EK +   +L  F  +  +   +   ++K
Sbjct: 203 KPY-DRKEISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILK 261

Query: 327 HQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVAL 369
           H GIFY++ KG   T+ L++ Y    LI+  P+     K + L
Sbjct: 262 HPGIFYVSTKGSSQTLFLREAYSKGCLIEPNPIYNVRRKMLDL 304


>AT4G24320.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr4:12602298-12603485 REVERSE
           LENGTH=395
          Length = 395

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 15/244 (6%)

Query: 132 VLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLH 191
           V V  L K LML     +PL  L+    +LGLP D+   LI  YP++F +  ++ R    
Sbjct: 126 VTVQRLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDR---- 181

Query: 192 LEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGP---FAFKVNFPAGFR 248
               + +LA+T    R       N  P  +  + + + DG+ V       + +NFP G+ 
Sbjct: 182 -LTGEKTLALTISSRR-------NNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYE 233

Query: 249 PNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLD 308
            +      +E+WQ L + SPY NA        ++ K AVAV+HELL L + K+  +  + 
Sbjct: 234 LHKRVKNWVEQWQNLPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVI 293

Query: 309 AFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVA 368
                     +    L+ H GIFY+++K    TV+L++ Y    L++K PL+   ++++ 
Sbjct: 294 CLGEYLGFGMRFKKALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIY 353

Query: 369 LCGR 372
           L  +
Sbjct: 354 LMSK 357


>AT2G31290.2 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr2:13344151-13345398 FORWARD
           LENGTH=415
          Length = 415

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 30/244 (12%)

Query: 130 EPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDF 189
           EPVL   L KLLML V+ R+ +  L       G P D+   ++ KY   F +    GR  
Sbjct: 123 EPVLADRLAKLLMLSVNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKS 182

Query: 190 ---LHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAG 246
              + L  W   LAV+A EA   + G   ++P                   +F  + P+ 
Sbjct: 183 SMEIELLLWKPELAVSAVEAAAKKCG---SEP-------------------SFSCSLPST 220

Query: 247 F-RPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSS 305
           + +P     ++   +    + SPY +         +S KR+V ++HELLSLT+ K+L+  
Sbjct: 221 WTKP----WERFMEFNAFPYISPYEDHGDLVEGSKESEKRSVGLVHELLSLTLWKKLSIV 276

Query: 306 QLDAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNK 365
           +L  F  E  LP +L   L+KH GIFY+ NK    TV+L++ Y GS LI K PL+   +K
Sbjct: 277 KLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVHTVILREGYNGSELIHKDPLVVVKDK 336

Query: 366 FVAL 369
           F  L
Sbjct: 337 FGEL 340


>AT2G31290.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr2:13344151-13345398 FORWARD
           LENGTH=415
          Length = 415

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 30/244 (12%)

Query: 130 EPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDF 189
           EPVL   L KLLML V+ R+ +  L       G P D+   ++ KY   F +    GR  
Sbjct: 123 EPVLADRLAKLLMLSVNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKS 182

Query: 190 ---LHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFPAG 246
              + L  W   LAV+A EA   + G   ++P                   +F  + P+ 
Sbjct: 183 SMEIELLLWKPELAVSAVEAAAKKCG---SEP-------------------SFSCSLPST 220

Query: 247 F-RPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSS 305
           + +P     ++   +    + SPY +         +S KR+V ++HELLSLT+ K+L+  
Sbjct: 221 WTKP----WERFMEFNAFPYISPYEDHGDLVEGSKESEKRSVGLVHELLSLTLWKKLSIV 276

Query: 306 QLDAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNK 365
           +L  F  E  LP +L   L+KH GIFY+ NK    TV+L++ Y GS LI K PL+   +K
Sbjct: 277 KLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVHTVILREGYNGSELIHKDPLVVVKDK 336

Query: 366 FVAL 369
           F  L
Sbjct: 337 FGEL 340


>AT4G08940.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr4:5730986-5732173 REVERSE LENGTH=395
          Length = 395

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 146/362 (40%), Gaps = 43/362 (11%)

Query: 14  PRATVVGCIRHKSSGGRRPKKKTYHRVPELDRVMELRKKPLMILQLKTLIQSQPRNSPLF 73
           P +     I+H+S+           ++P L+ ++        +++ K  I  QP    L 
Sbjct: 53  PESARTKSIQHEST-----------KLPHLESLVSRDAHFRFLIRSKEFISKQPERI-LR 100

Query: 74  LRD---LEKNVGFVRKWDFMALIERHPTIF---RVAGAPPSVSLTDKXXXXXXXXXXXXX 127
           L D   L + +GF R       I +HP IF   R +     +  T+              
Sbjct: 101 LDDAGKLYRELGFPRGRKVTKFIPKHPLIFQTYRHSDGKIWLGFTEFMEDLLDEEKGLME 160

Query: 128 LMEPVLVTNLRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGR 187
            ME   V  +RKLLM+  D R+ L  +       G+P DF +  +AKYP +F  R V G 
Sbjct: 161 SMELDRVNCVRKLLMMTKDKRILLSKIHHTRLLFGIPEDFRDR-VAKYPDYF--RVVTGG 217

Query: 188 D---FLHLEDWDSSLAVTAREARLAQEGVLNTKPNQDQRKVKISRDGNYVGPFAFKVNFP 244
           D    L L +WD++LAV+  E               D+ K K          F F V   
Sbjct: 218 DGNRVLELVNWDTNLAVSELERLFMI----------DEDKAK--------RVFKFPVKHG 259

Query: 245 AGFRPNVGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTS 304
                     ++L         SPY +  + DV   ++ K  V ++HE L+LT+EKR + 
Sbjct: 260 KELELEEKDTRKLNLLNTFPLVSPYSDGWKLDVWSLEAEKYRVGIVHEFLNLTLEKRASI 319

Query: 305 SQLDAFHSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSN-LIDKCPLLEFN 363
             +  F  E  L  Q    L K    FYL    +  TV LKD Y  +  L+ K P + FN
Sbjct: 320 HHIVEFKDEFSLTRQTYQMLKKQSMSFYLAGTEMNWTVFLKDAYDENGVLVSKDPQVVFN 379

Query: 364 NK 365
            K
Sbjct: 380 EK 381


>AT5G62990.1 | Symbols: emb1692 | Ubiquitin carboxyl-terminal
           hydrolase family protein | chr5:25277828-25279312
           FORWARD LENGTH=494
          Length = 494

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 151/357 (42%), Gaps = 52/357 (14%)

Query: 39  RVPELDRVMELRKKPLMILQLKTLIQSQPRNS-PL-FLRDLEKNVGFVRKWDFMALIERH 96
           R P LDR +  + +   + +L TL+ S+P++  P+  L      +        +++I R+
Sbjct: 61  RSPSLDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRY 120

Query: 97  PTIFRVAGAPP--------------SVSLTDKXXXXXXXXXXXXXLMEPVLVTNLRKLLM 142
           PTIF +   P                V LT                +   L T L+KLLM
Sbjct: 121 PTIFELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLLM 180

Query: 143 LCVDCRVPLETLELVGAELGLPSDFEECLIAKYP-QFFAIRRVRGRDFLHLEDWDSSLAV 201
           L    R+ L  L  +  + G P +F   L   YP +F  +    GR          +L +
Sbjct: 181 LSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGR----------ALEL 230

Query: 202 TAREARLAQEGVLNTKPNQD-QRKVKISRDGNYVGPFAFK-VNFPAGF---RPNVGYLQQ 256
            + +  LA     N  P+ +  R + + R      P  FK +N   G    R + G+L +
Sbjct: 231 VSSDPELA-----NQMPSPEVDRGLIVDR------PLKFKRLNLRRGLNLKRRHQGFLIK 279

Query: 257 LERWQKL---EFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAFHSE 313
                 +   +  S YL +   +     + KRA AV+ E+L LT+EKR     L  F  E
Sbjct: 280 FRESPDVCPYKMSSDYLASESIE-----AEKRACAVVREVLGLTVEKRTLIDHLTHFRKE 334

Query: 314 CFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYL-GSNLIDKCPLLEFNNKFVAL 369
             LP++L   +++H  +FY++ KG+R +V L + Y    +L+DK   L    + + L
Sbjct: 335 FSLPNKLRDLIVRHPELFYVSIKGMRDSVFLVEAYNDNGDLLDKDERLVIRERLIDL 391


>AT2G39120.1 | Symbols:  | Ubiquitin carboxyl-terminal hydrolase
           family protein | chr2:16321794-16322957 FORWARD
           LENGTH=387
          Length = 387

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 29/247 (11%)

Query: 137 LRKLLMLCVDCRVPLETLELVGAELGLPSDFEECLIAKYPQFFAIRRVRGRDFLHLEDWD 196
           L+KL+++  D  +PL  ++ +   LGLP D        Y QF  +       F+ +ED  
Sbjct: 137 LKKLILMSKDNVLPLSIVQGMKWYLGLPDD--------YLQFPDMNLDSSFRFVDMEDGV 188

Query: 197 SSLAVTAREARLAQEGVLNT--KPNQDQRKVKISRDGNYVGPFAFKVNFP----AGFRPN 250
             LAV         + VL+   K    +R+ ++S +         ++ FP     G R  
Sbjct: 189 KGLAVDYN----GGDKVLSVLQKNAMKKRRGEVSLE---------EIEFPLFPSKGCRLR 235

Query: 251 VGYLQQLERWQKLEFPSPYLNARRFDVADPKSRKRAVAVIHELLSLTMEKRLTSSQLDAF 310
           V     L  +QKL + SPY +    D +   + KR V  +HELL L +E      +L   
Sbjct: 236 VKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCL 295

Query: 311 HSECFLPSQLLLCLIKHQGIFYLTNKGVRSTVLLKDTYLGSNLIDKCPLLEFNNKFVALC 370
                LP ++     +H  IFYL+ K    T +L++ Y     ++  P+L    K++ L 
Sbjct: 296 KKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355

Query: 371 GRRNTDL 377
             +N++L
Sbjct: 356 --KNSEL 360