Miyakogusa Predicted Gene

Lj0g3v0309399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0309399.1 tr|G3GRH6|G3GRH6_CRIGR RNA polymerase-associated
protein LEO1 OS=Cricetulus griseus GN=I79_000125
PE,42.31,0.00000001,seg,NULL; SUBFAMILY NOT NAMED,NULL; LEO1
PROTEIN,NULL; Leo1,Leo1-like
protein,NODE_13333_length_1668_cov_92.332733.path3.1
         (242 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61150.2 | Symbols: VIP4 | leo1-like family protein | chr5:24...   283   6e-77
AT5G61150.1 | Symbols: VIP4 | leo1-like family protein | chr5:24...   283   6e-77

>AT5G61150.2 | Symbols: VIP4 | leo1-like family protein |
           chr5:24603846-24607528 REVERSE LENGTH=623
          Length = 623

 Score =  283 bits (725), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 162/200 (81%), Gaps = 1/200 (0%)

Query: 1   MNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRDVRNPDGTKSV 60
           MNMIKVSNIMG+DPKPFD KT+VEEDTF+TDE GAK RIRL+NNIVR R V++ DG    
Sbjct: 261 MNMIKVSNIMGIDPKPFDAKTFVEEDTFMTDEPGAKNRIRLDNNIVRHRFVKSRDGKTYS 320

Query: 61  ESNARFVRWSDGSVQLLIGNEVLDISVQDAQHDQAHLFLRHGKGVLQSQGRLLRKMRFMP 120
           ESNARFVRWSDGS+QLLIGNEVL+I+ QDA+ DQ HLF++H KG+LQSQGR+L+KMRF P
Sbjct: 321 ESNARFVRWSDGSLQLLIGNEVLNITEQDAKEDQNHLFIKHEKGILQSQGRILKKMRFTP 380

Query: 121 SSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXXXSQTIRANVILNRKRE 180
           SSLTSNSHRLLTA+V+SR KK +KVKNC+TDIDP           SQ ++A+  L++ RE
Sbjct: 381 SSLTSNSHRLLTAIVESRQKKAFKVKNCVTDIDPEREKEKREKAESQNLKASTKLSQARE 440

Query: 181 KLSRKYTPAVERRRQLSPGF 200
           K+ RKY   VE RRQLS G+
Sbjct: 441 KIKRKYPLPVE-RRQLSTGY 459


>AT5G61150.1 | Symbols: VIP4 | leo1-like family protein |
           chr5:24603846-24607528 REVERSE LENGTH=625
          Length = 625

 Score =  283 bits (725), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 162/200 (81%), Gaps = 1/200 (0%)

Query: 1   MNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGAKKRIRLENNIVRWRDVRNPDGTKSV 60
           MNMIKVSNIMG+DPKPFD KT+VEEDTF+TDE GAK RIRL+NNIVR R V++ DG    
Sbjct: 261 MNMIKVSNIMGIDPKPFDAKTFVEEDTFMTDEPGAKNRIRLDNNIVRHRFVKSRDGKTYS 320

Query: 61  ESNARFVRWSDGSVQLLIGNEVLDISVQDAQHDQAHLFLRHGKGVLQSQGRLLRKMRFMP 120
           ESNARFVRWSDGS+QLLIGNEVL+I+ QDA+ DQ HLF++H KG+LQSQGR+L+KMRF P
Sbjct: 321 ESNARFVRWSDGSLQLLIGNEVLNITEQDAKEDQNHLFIKHEKGILQSQGRILKKMRFTP 380

Query: 121 SSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPXXXXXXXXXXXSQTIRANVILNRKRE 180
           SSLTSNSHRLLTA+V+SR KK +KVKNC+TDIDP           SQ ++A+  L++ RE
Sbjct: 381 SSLTSNSHRLLTAIVESRQKKAFKVKNCVTDIDPEREKEKREKAESQNLKASTKLSQARE 440

Query: 181 KLSRKYTPAVERRRQLSPGF 200
           K+ RKY   VE RRQLS G+
Sbjct: 441 KIKRKYPLPVE-RRQLSTGY 459