Miyakogusa Predicted Gene

Lj0g3v0309049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0309049.1 tr|I0YXA3|I0YXA3_9CHLO Transcriptional
coactivator/pterin dehydratase (Fragment) OS=Coccomyxa
subell,51.06,2e-19,no description,Transcriptional coactivator/pterin
dehydratase; PCD-like,Transcriptional coactivator/,CUFF.20877.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29810.1 | Symbols:  | Transcriptional coactivator/pterin deh...   198   1e-51
AT5G51110.1 | Symbols:  | Transcriptional coactivator/pterin deh...    94   6e-20
AT5G51110.2 | Symbols:  | Transcriptional coactivator/pterin deh...    94   7e-20

>AT1G29810.1 | Symbols:  | Transcriptional coactivator/pterin
           dehydratase | chr1:10435606-10437406 REVERSE LENGTH=187
          Length = 187

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 132/187 (70%), Gaps = 16/187 (8%)

Query: 5   RLTIPLLHLSAVSNAANKLPLLSFF-------QPYSYNTRKRMDSQMHKNQPGGASS--- 54
           RL +P L     S +  ++P  S F       + + + T K     +  +  GG++S   
Sbjct: 3   RLLLPKL----FSISRTQVPAASLFNNLYRRHKRFVHWTSKMSTDSVRSSTTGGSASGAR 58

Query: 55  TFCTMSNKDLSTKKCVPCNTKDLQPMTEDAAHALIPQVSEWNLVKEGTTLKLRRSWKVKT 114
           TFC+++  DLSTKKCVPCN KDL+ MTE +A  L+ +V+ W+L  +  TLKL RSW+VK+
Sbjct: 59  TFCSLA--DLSTKKCVPCNAKDLRAMTEQSAQDLLQKVAGWDLANDNDTLKLHRSWRVKS 116

Query: 115 FTKGLEFFKIIAEIAEAEGHHPDLHLVGWNNVTIEIWTHSAGGLTENDFILAAKINELNL 174
           FTKGL+FF+ +A+IAE+EGHHPDLHLVGWNNV IEIWTH+ GGLTENDFILAAKINEL +
Sbjct: 117 FTKGLDFFQRVADIAESEGHHPDLHLVGWNNVKIEIWTHAIGGLTENDFILAAKINELQV 176

Query: 175 HDLLRRK 181
            DLLR+K
Sbjct: 177 EDLLRKK 183


>AT5G51110.1 | Symbols:  | Transcriptional coactivator/pterin
           dehydratase | chr5:20778316-20779380 REVERSE LENGTH=220
          Length = 220

 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)

Query: 64  LSTKKCVPCNTKDLQPMTEDAAHALIPQVSEWNLVK-EGTTLKLRRSWKVKTFTKGLEFF 122
           LS  +C P ++    P++ D A  L+ +V  W++V  E   LK+R  WKV+ F  G+E  
Sbjct: 99  LSQLQCSPVSSSQ-PPLSGDDARTLLHKVLGWSIVDNEAGGLKIRCMWKVRDFGCGVELI 157

Query: 123 KIIAEIAEAEGHHPDLHLVGWNNVTIEIWTHSAGGLTENDFILAAKINELNLHDLLRRK 181
             I ++AEA GH+P LHL     V  E++T S GGL+ NDFI+AAKI+++   DL  RK
Sbjct: 158 NRIHKVAEASGHYPSLHLESPTQVRAELFTSSIGGLSMNDFIMAAKIDDIKTSDLSPRK 216


>AT5G51110.2 | Symbols:  | Transcriptional coactivator/pterin
           dehydratase | chr5:20778316-20779380 REVERSE LENGTH=193
          Length = 193

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)

Query: 64  LSTKKCVPCNTKDLQPMTEDAAHALIPQVSEWNLVK-EGTTLKLRRSWKVKTFTKGLEFF 122
           LS  +C P ++    P++ D A  L+ +V  W++V  E   LK+R  WKV+ F  G+E  
Sbjct: 72  LSQLQCSPVSSSQ-PPLSGDDARTLLHKVLGWSIVDNEAGGLKIRCMWKVRDFGCGVELI 130

Query: 123 KIIAEIAEAEGHHPDLHLVGWNNVTIEIWTHSAGGLTENDFILAAKINELNLHDLLRRK 181
             I ++AEA GH+P LHL     V  E++T S GGL+ NDFI+AAKI+++   DL  RK
Sbjct: 131 NRIHKVAEASGHYPSLHLESPTQVRAELFTSSIGGLSMNDFIMAAKIDDIKTSDLSPRK 189