Miyakogusa Predicted Gene

Lj0g3v0309019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0309019.1 CUFF.20878.1
         (525 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51150.1 | Symbols:  | Mitochondrial import inner membrane tr...   708   0.0  
AT1G34630.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   119   5e-27
AT1G34630.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    95   1e-19

>AT5G51150.1 | Symbols:  | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr5:20789034-20791495 FORWARD LENGTH=531
          Length = 531

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/470 (73%), Positives = 388/470 (82%), Gaps = 6/470 (1%)

Query: 61  CDHGPDESCVAHAVGNLCQTFLLSYGVRVGIGILLRAFKLARGQSYSSLLDLKQLVSEKD 120
           CDH  D SCVA+A+GNLCQ+FLLSYGVRVGIGILLRAFKLARGQSYSSLLDLKQLVSEKD
Sbjct: 63  CDHA-DVSCVANAIGNLCQSFLLSYGVRVGIGILLRAFKLARGQSYSSLLDLKQLVSEKD 121

Query: 121 LIVREEACRIGLLFGGFTGSYHALRCLLRKWRKKETPLNAILAGSVAGFSILALNDSNXX 180
           LIVREEACRIGLLFGGFTGSYHALRC LRKWRKKETPLN++LAGSVAG SILAL+DSN  
Sbjct: 122 LIVREEACRIGLLFGGFTGSYHALRCCLRKWRKKETPLNSVLAGSVAGLSILALDDSNQR 181

Query: 181 XXXXXXXXXXXXQSAYNSAKSKNKFHFWGSHWRHGDSLLFALACAQVMYAFVMRPESLPK 240
                       Q+AYNSAKSKNKFH WGSHWRHGDSLLF+LACAQVMY+F+MRPE+LPK
Sbjct: 182 RTLALYLLARLGQAAYNSAKSKNKFHLWGSHWRHGDSLLFSLACAQVMYSFIMRPETLPK 241

Query: 241 SYQDFIQKTGPVAAPVYKAVRDSCRGHPVDVASLHTYLSHRGRSEYVKLEEFPSIIPCSI 300
           SY++FIQKTGPVA PVY+AVR+ CRG P+DVASL  Y+S +  +  VK+EEF SIIPC+ 
Sbjct: 242 SYREFIQKTGPVARPVYQAVRECCRGGPIDVASLSAYISSKNEASDVKVEEFASIIPCAA 301

Query: 301 IHPGTKSCLAHEVNATSATFKKTFPLYFSLTFVPFVVLRQQKFTDAPFRTLWFAIKGSVR 360
           IHP T SCLA   NA SATFKKTFPLYFSLTFVP+VVL  QKF  +P+RT W AI+ SVR
Sbjct: 302 IHPNTNSCLAQNANAMSATFKKTFPLYFSLTFVPYVVLHLQKFMASPYRTSWLAIRDSVR 361

Query: 361 STAFLSAFVGIFQGVICLHRKLASRDHKFVYWIAGGISALSVLLEKKARRSELALYVLPR 420
           ST+FLSAFVGIFQ  IC HRK+A++DHK VYW AGG +ALSV+LEKK RRSELALYVLPR
Sbjct: 362 STSFLSAFVGIFQAFICAHRKVATKDHKLVYWFAGGAAALSVMLEKKPRRSELALYVLPR 421

Query: 421 AVDSLWYILVNRHLLPIVKNAEVFLFSLCMGGIMYYLEYEPETMAPFLRSLIRRFLASRI 480
           A DSLW ILVNRHLLP +KNAEV LF  CMGGIMYYLEYEP+TMAPFLR LIRRFLAS+I
Sbjct: 422 AGDSLWEILVNRHLLPDIKNAEVALFCGCMGGIMYYLEYEPDTMAPFLRGLIRRFLASQI 481

Query: 481 XXXXXXXXXTA--SYLQALDGTTKPKLPR-RDSES--SSEQYNLESIPGL 525
                    ++  SYLQ LD   KPK    R+ E+  + E+YNLE+IPGL
Sbjct: 482 SNPSSKYPHSSSYSYLQTLDALKKPKTQESREGETPKAEEKYNLEAIPGL 531


>AT1G34630.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Mitochondrial import inner membrane translocase
           subunit Tim17/Tim22/Tim23 family protein
           (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins
           in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95;
           Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes
           - 45 (source: NCBI BLink). | chr1:12685317-12687435
           FORWARD LENGTH=481
          Length = 481

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 168/350 (48%), Gaps = 24/350 (6%)

Query: 125 EEACRIGLLFGGFTGSY----HALRCLLRKWRKKETPLNAILAGSVAGFSILALNDSNXX 180
           +E  R GL  G F G++     A+  L     K+     A+ AG VAG S+L L   N  
Sbjct: 112 KETLRYGLFLGTFAGTFVSVDEAIAALAGD--KRTAKWRALFAGLVAGPSML-LTGPNTQ 168

Query: 181 XXXXXXXXXXXXQSAYNSAKSKNKFHFWGS-----HWRHGDSLLFALACAQVMYAFVMRP 235
                       ++A  +++   K   +G+      W+HGD  L  L+ +Q++ A++++ 
Sbjct: 169 HTSLAVYILM--RAAVLASRCGIKSKRFGTICKPLTWKHGDLFLMCLSSSQILSAYILKQ 226

Query: 236 ESLPKSYQDFIQKTGPVAAPVYKAVRDSCRGHP-VDVASLHTYLSHRGRSEYVKLEEFPS 294
           ESLP SY+ F+ K G     + + V+D     P  ++ ++  Y    G    V ++  P+
Sbjct: 227 ESLPSSYKSFLNKQGGKDLSILQGVKDIATAQPFTNLRAIEKYYKSVG----VDIKLDPT 282

Query: 295 I-IPCSIIHPGTKSCLAHEVNATSATFKKTFPLYFSLTFVPFVVLRQQKFTDAPFRTLWF 353
           + +PC+IIH G +SC+ H V      +K+  P+Y  +  +P +++ +Q      +  L  
Sbjct: 283 MKVPCTIIH-GNESCVKHGVTFFLQAYKRALPVYVPVYLIPALIVHRQDLLKKQYSILGK 341

Query: 354 AIKGSVRSTAFLSAFVGIFQGVICLHRKLASRDHKFVYWIAGGISALSVLLEKKARRSEL 413
            + G+ RS+ FL+ +        CL  +     +  +  IA   + L++ +EKK+RR E+
Sbjct: 342 GLLGTARSSLFLATYCSSAWAWTCLLFRTFETCNIPLVAIATFPTGLALAIEKKSRRIEI 401

Query: 414 ALYVLPRAVDSLWYILVNRHLL---PIVKNAEVFLFSLCMGGIMYYLEYE 460
           +LY L RA++S +  +     +     ++ A+V +FS+    IM+    E
Sbjct: 402 SLYCLARAIESFFTCMTEAGYIRPPKSLRRADVVVFSVSTAIIMHCYAQE 451


>AT1G34630.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 15 growth stages; BEST
           Arabidopsis thaliana protein match is: Mitochondrial
           import inner membrane translocase subunit
           Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr1:12685317-12687107
           FORWARD LENGTH=395
          Length = 395

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 31/270 (11%)

Query: 125 EEACRIGLLFGGFTGSY----HALRCL-----LRKWRKKETPLNAILAGSVAGFSILALN 175
           +E  R GL  G F G++     A+  L       KWR       A+ AG VAG S+L L 
Sbjct: 112 KETLRYGLFLGTFAGTFVSVDEAIAALAGDKRTAKWR-------ALFAGLVAGPSML-LT 163

Query: 176 DSNXXXXXXXXXXXXXXQSAYNSAKSKNKFHFWGS-----HWRHGDSLLFALACAQVMYA 230
             N              ++A  +++   K   +G+      W+HGD  L  L+ +Q++ A
Sbjct: 164 GPNTQHTSLAVYILM--RAAVLASRCGIKSKRFGTICKPLTWKHGDLFLMCLSSSQILSA 221

Query: 231 FVMRPESLPKSYQDFIQKTGPVAAPVYKAVRDSCRGHP-VDVASLHTYLSHRGRSEYVKL 289
           ++++ ESLP SY+ F+ K G     + + V+D     P  ++ ++  Y    G    V +
Sbjct: 222 YILKQESLPSSYKSFLNKQGGKDLSILQGVKDIATAQPFTNLRAIEKYYKSVG----VDI 277

Query: 290 EEFPSI-IPCSIIHPGTKSCLAHEVNATSATFKKTFPLYFSLTFVPFVVLRQQKFTDAPF 348
           +  P++ +PC+IIH G +SC+ H V      +K+  P+Y  +  +P +++ +Q      +
Sbjct: 278 KLDPTMKVPCTIIH-GNESCVKHGVTFFLQAYKRALPVYVPVYLIPALIVHRQDLLKKQY 336

Query: 349 RTLWFAIKGSVRSTAFLSAFVGIFQGVICL 378
             L   + G+ RS+ FL+ +        CL
Sbjct: 337 SILGKGLLGTARSSLFLATYCSSAWAWTCL 366