Miyakogusa Predicted Gene
- Lj0g3v0308719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0308719.1 tr|G7JMP2|G7JMP2_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_4g10,53,1e-18,seg,NULL; zf-CCCH,Zinc finger, CCCH-type; ZINC
FINGER CCCH DOMAIN-CONTAINING PROTEIN,NULL; PROTEIN P,CUFF.20856.1
(190 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48440.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 61 5e-10
AT5G63260.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 58 5e-09
AT5G63260.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 57 5e-09
AT5G18550.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 49 1e-06
AT2G47850.3 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 48 4e-06
AT2G47850.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 48 4e-06
AT3G06410.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fami... 47 7e-06
>AT3G48440.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr3:17941402-17943576 FORWARD LENGTH=448
Length = 448
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 15/64 (23%)
Query: 138 CRSYLETGDCKSKSDC-----------LPLQNLSDKGLPLRPDQNVCSHYS----CKFES 182
C Y++TGDCK K +C LP L+DKGLPLRPDQN+C++YS CKF
Sbjct: 352 CSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGP 411
Query: 183 ACKY 186
AC++
Sbjct: 412 ACRF 415
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 51/128 (39%), Gaps = 28/128 (21%)
Query: 74 TEVCRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXXXXXX 133
E C +Y R G CK+G C + H F A + N E D K+
Sbjct: 113 AEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARD----NKVREKEDDGGKL--------- 159
Query: 134 XXXXCRSYLETGDCKSKSDC-----LPLQNLSDK------GLPLRPDQNVCSHY----SC 178
C+ Y TG CK C +P L+ GLPLRP + C +Y SC
Sbjct: 160 GLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSC 219
Query: 179 KFESACKY 186
K+ + CK+
Sbjct: 220 KYGAECKF 227
>AT5G63260.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:25361900-25364453 FORWARD LENGTH=451
Length = 451
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 15/64 (23%)
Query: 138 CRSYLETGDCKSKSDC--------LPLQ---NLSDKGLPLRPDQNVCSHYS----CKFES 182
C YL+TGDCK K C LP Q + +DKGLPLRPDQ++C+HYS CKF
Sbjct: 356 CTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGP 415
Query: 183 ACKY 186
AC++
Sbjct: 416 ACRF 419
>AT5G63260.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:25361900-25364453 FORWARD LENGTH=435
Length = 435
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 15/64 (23%)
Query: 138 CRSYLETGDCKSKSDC--------LPLQ---NLSDKGLPLRPDQNVCSHYS----CKFES 182
C YL+TGDCK K C LP Q + +DKGLPLRPDQ++C+HYS CKF
Sbjct: 340 CTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGP 399
Query: 183 ACKY 186
AC++
Sbjct: 400 ACRF 403
>AT5G18550.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:6160515-6162729 FORWARD LENGTH=465
Length = 465
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 33/134 (24%)
Query: 71 ERSTEV-CRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXX 129
ER E C YY R GVC YG C + H R + R TE + +++
Sbjct: 50 ERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLR------TEAGEFPERM----- 98
Query: 130 XXXXXXXXCRSYLETGDCKSKSDC---LPLQ----------NLSDKGLPLRPDQNVCSHY 176
C+ ++ TG CK + C P Q +L+ G PLRP + CS++
Sbjct: 99 ----GQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYF 154
Query: 177 ----SCKFESACKY 186
CKF S C+Y
Sbjct: 155 MRTGQCKFGSTCRY 168
>AT2G47850.3 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:19595953-19598119 FORWARD LENGTH=468
Length = 468
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 31/125 (24%)
Query: 77 CRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXXXXXXXXX 136
C YY R GVC YG C Y H R + +A+ R+ T + ++
Sbjct: 51 CAYYMRTGVCGYGNRCRYNHPRDRASVEATVRA-------TGQYPERF---------GEP 94
Query: 137 XCRSYLETGDCKSKSDC-----------LPLQNLSDKGLPLRPDQNVCSHY----SCKFE 181
C+ YL+TG CK + C + L+ G P+R N CS+Y CKF
Sbjct: 95 PCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFG 154
Query: 182 SACKY 186
CK+
Sbjct: 155 ITCKF 159
>AT2G47850.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:19595953-19598119 FORWARD LENGTH=468
Length = 468
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 31/125 (24%)
Query: 77 CRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXXXXXXXXX 136
C YY R GVC YG C Y H R + +A+ R+ T + ++
Sbjct: 51 CAYYMRTGVCGYGNRCRYNHPRDRASVEATVRA-------TGQYPERF---------GEP 94
Query: 137 XCRSYLETGDCKSKSDC-----------LPLQNLSDKGLPLRPDQNVCSHY----SCKFE 181
C+ YL+TG CK + C + L+ G P+R N CS+Y CKF
Sbjct: 95 PCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFG 154
Query: 182 SACKY 186
CK+
Sbjct: 155 ITCKF 159
>AT3G06410.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr3:1947471-1949528 REVERSE LENGTH=462
Length = 462
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 49/134 (36%), Gaps = 33/134 (24%)
Query: 71 ERSTEV-CRYYQRYGVCKYGKDCWYIHTRGNSFDQASERSMTNPATETNDHQKKIXXXXX 129
ER E C YY R GVC YG C + H R R E H
Sbjct: 53 ERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHP-------- 104
Query: 130 XXXXXXXXCRSYLETGDCKSKSDC---LPLQN----------LSDKGLPLRPDQNVCSHY 176
C+ ++ TG CK + C P Q LS G PLRP + CS+Y
Sbjct: 105 -------VCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYY 157
Query: 177 ----SCKFESACKY 186
CKF C++
Sbjct: 158 LRTGQCKFGLTCRF 171