Miyakogusa Predicted Gene

Lj0g3v0308609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308609.1 Non Chatacterized Hit- tr|D8TU59|D8TU59_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,27.92,0.000000009,no description,Tetratricopeptide-like helical;
Tetratricopeptide repeats,Tetratricopeptide repeat; c,CUFF.20886.1
         (482 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17680.2 | Symbols:  | tetratricopeptide repeat (TPR)-contain...   235   4e-62
AT1G17680.1 | Symbols:  | tetratricopeptide repeat (TPR)-contain...   235   4e-62
AT3G04240.1 | Symbols: SEC | Tetratricopeptide repeat (TPR)-like...    57   2e-08

>AT1G17680.2 | Symbols:  | tetratricopeptide repeat (TPR)-containing
           protein | chr1:6076388-6082160 FORWARD LENGTH=896
          Length = 896

 Score =  235 bits (600), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 207/353 (58%), Gaps = 6/353 (1%)

Query: 127 PKLTRMLGDATLHYACGHYDKAIAVLHEVVRLAPNLQDAYHTLGLVYNSRGDYKKAMGFY 186
           P + +   +A   +A G   +A+ +L EV++ AP    AY+ L  V    G  + +    
Sbjct: 150 PDILKRFREALFLHAHGRDIEALPILVEVIKQAPAFDIAYYYLSRVSEQLGKTESSSTEA 209

Query: 187 M-IAAHLTPKDSSLWKQLFTWSIERGYIGQASFCLSKAITADPKDMTLRSHRAMLYVELQ 245
           + IAA++    S  WK L+    E+  I  A    SKAI ADP D+ L+   A + +   
Sbjct: 210 LKIAANIKGSKSPFWKLLYERFKEQENISVARSYASKAIQADPDDIPLKYEYADICLNTG 269

Query: 246 DYQKAAMECEQLYQLCHENVDALKAAAKFYQKCGKVECAVGILEDYLKTQPDGENASVLD 305
            Y++AA   EQ+++ C E ++ALK   +++ K G+ E A  ILED++K+        VLD
Sbjct: 270 KYREAAETFEQIFRRCPERIEALKWGVQYFLKSGEGERAASILEDHIKSHSSEVGHDVLD 329

Query: 306 LLGAILMETKAYDKALQYFEHA-QMVNSGKEFPLSLKIKAGICHIHLGNMETAQGFFNDL 364
           LL ++ M+  A+D+AL+Y     Q+ N GKE   SLKI+  ICH+HL  ME A+   + L
Sbjct: 330 LLASVFMKINAHDRALKYIHDVRQIYNVGKELSSSLKIRQAICHVHLEEMEQAESVLSIL 389

Query: 365 KPENAREHSDLVTEVADSLMALEHYNSALNYYL-MLERPCGNENDHLYLKIARCYLSLKE 423
             E   EH +L+T +AD L  + +++SAL YY+  +  P    N +L++KIARCY+SL+E
Sbjct: 390 PQEAVSEHPELITNLADELTNIGNFHSALKYYIEAISEPV---NGNLFVKIARCYMSLEE 446

Query: 424 RLQAILYFSKALETLQDDVDVRLNLASLLLEEAKEDEAISLLSPPQDSESSEA 476
           R QAI+++ KAL  L D VDVR+ LASLLLE+ K DEA+ +LSPP++ +   A
Sbjct: 447 RKQAIVFYYKALNELSDTVDVRITLASLLLEDGKRDEAVLVLSPPENPDPDTA 499


>AT1G17680.1 | Symbols:  | tetratricopeptide repeat (TPR)-containing
           protein | chr1:6076388-6082160 FORWARD LENGTH=896
          Length = 896

 Score =  235 bits (600), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 207/353 (58%), Gaps = 6/353 (1%)

Query: 127 PKLTRMLGDATLHYACGHYDKAIAVLHEVVRLAPNLQDAYHTLGLVYNSRGDYKKAMGFY 186
           P + +   +A   +A G   +A+ +L EV++ AP    AY+ L  V    G  + +    
Sbjct: 150 PDILKRFREALFLHAHGRDIEALPILVEVIKQAPAFDIAYYYLSRVSEQLGKTESSSTEA 209

Query: 187 M-IAAHLTPKDSSLWKQLFTWSIERGYIGQASFCLSKAITADPKDMTLRSHRAMLYVELQ 245
           + IAA++    S  WK L+    E+  I  A    SKAI ADP D+ L+   A + +   
Sbjct: 210 LKIAANIKGSKSPFWKLLYERFKEQENISVARSYASKAIQADPDDIPLKYEYADICLNTG 269

Query: 246 DYQKAAMECEQLYQLCHENVDALKAAAKFYQKCGKVECAVGILEDYLKTQPDGENASVLD 305
            Y++AA   EQ+++ C E ++ALK   +++ K G+ E A  ILED++K+        VLD
Sbjct: 270 KYREAAETFEQIFRRCPERIEALKWGVQYFLKSGEGERAASILEDHIKSHSSEVGHDVLD 329

Query: 306 LLGAILMETKAYDKALQYFEHA-QMVNSGKEFPLSLKIKAGICHIHLGNMETAQGFFNDL 364
           LL ++ M+  A+D+AL+Y     Q+ N GKE   SLKI+  ICH+HL  ME A+   + L
Sbjct: 330 LLASVFMKINAHDRALKYIHDVRQIYNVGKELSSSLKIRQAICHVHLEEMEQAESVLSIL 389

Query: 365 KPENAREHSDLVTEVADSLMALEHYNSALNYYL-MLERPCGNENDHLYLKIARCYLSLKE 423
             E   EH +L+T +AD L  + +++SAL YY+  +  P    N +L++KIARCY+SL+E
Sbjct: 390 PQEAVSEHPELITNLADELTNIGNFHSALKYYIEAISEPV---NGNLFVKIARCYMSLEE 446

Query: 424 RLQAILYFSKALETLQDDVDVRLNLASLLLEEAKEDEAISLLSPPQDSESSEA 476
           R QAI+++ KAL  L D VDVR+ LASLLLE+ K DEA+ +LSPP++ +   A
Sbjct: 447 RKQAIVFYYKALNELSDTVDVRITLASLLLEDGKRDEAVLVLSPPENPDPDTA 499


>AT3G04240.1 | Symbols: SEC | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1114187-1120722 REVERSE
           LENGTH=977
          Length = 977

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 59/272 (21%)

Query: 136 ATLHYACGHYDKAIAVLHEVVRLAPNLQDAYHTLGLVYNSRGDYKKAMGFYMIAAHLTPK 195
             ++Y    YD  IA   E +R+ P   + Y  +   +  +GD  +A+ +Y+IA  L P 
Sbjct: 94  GAIYYQLQEYDMCIARNEEALRIQPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPN 153

Query: 196 DSSLWKQLFTWSIERGYIGQASFCLSKAITADPKDMTLRSHRAMLYVELQDYQKAAMECE 255
            +  W  L +  + +G + +A+ C  +A++ +P           L V+            
Sbjct: 154 FADAWSNLASAYMRKGRLSEATQCCQQALSLNP-----------LLVD------------ 190

Query: 256 QLYQLCHENVDALKAAAKFYQKCGKVECAVGILEDYLKTQPDGENASVLDLLGAILMETK 315
                 H N+  L  A       G +  A     + ++ QP    A     L  + ME+ 
Sbjct: 191 -----AHSNLGNLMKAQ------GLIHEAYSCYLEAVRIQPTF--AIAWSNLAGLFMESG 237

Query: 316 AYDKALQYFEHAQMVNSGKEFPLSLKIKAGICHIHLGNMETAQGFFND----------LK 365
             ++ALQY++ A          + LK      +++LGN+  A G   +          ++
Sbjct: 238 DLNRALQYYKEA----------VKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMR 287

Query: 366 PENAREHSDLVT---EVADSLMALEHYNSALN 394
           P +A    ++ +   E     +A+ HY  AL+
Sbjct: 288 PNSAMAFGNIASIYYEQGQLDLAIRHYKQALS 319