Miyakogusa Predicted Gene

Lj0g3v0308579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308579.1 tr|G7JU86|G7JU86_MEDTR Cytosine-specific
methyltransferase OS=Medicago truncatula GN=MTR_4g113420
PE,38.82,2e-18,BAH,Bromo adjacent homology (BAH) domain; DNA
(CYTOSINE-5)-METHYLTRANSFERASE 1 (DNMT1),NULL; CYTOSIN,CUFF.20840.1
         (328 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-...   230   1e-60
AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:303...   187   6e-48
AT4G19020.1 | Symbols: CMT2 | chromomethylase 2 | chr4:10414526-...   177   7e-45

>AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 |
           chr1:26248496-26253519 REVERSE LENGTH=839
          Length = 839

 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 167/291 (57%), Gaps = 16/291 (5%)

Query: 48  AAVVNDSEGSNTRFVGDPVPAEEARQHWPHRY-----QEKKQSARSKSSSDD--DILQAR 100
             VV + E    RF+ +P+P  EA+  WP RY     Q  K S+R K+  D+  +I++AR
Sbjct: 37  VTVVEEGEKHVARFLDEPIPESEAKSTWPDRYKPIEVQPPKASSRKKTKDDEKVEIIRAR 96

Query: 101 RHYREAEVDGSTLYKLYDDAHVKAEEGDDNYICKIVEMFEACDGTLHFTAQWYYRAKDTV 160
            HYR A VD   +Y+L DDA+V++ EG D +ICKI+EMFE  +G L+FTA+W+YR  DTV
Sbjct: 97  CHYRRAIVDERQIYELNDDAYVQSGEGKDPFICKIIEMFEGANGKLYFTARWFYRPSDTV 156

Query: 161 IKNLAFLIEEPRRIFYSEVKDDNPLDCLLEKLNIARVTLNVDLAEKEKTIPLCDYYCDTQ 220
           +K    LI++ +R+F+SE++D N L  L +KLNI  + LN +  E       CD++CD  
Sbjct: 157 MKEFEILIKK-KRVFFSEIQDTNELGLLEKKLNILMIPLNENTKETIPATENCDFFCDMN 215

Query: 221 YILPYSTFVKFPPXXXXXXXXXXXXXXXXXNVTGK---SEVDSQHKDTSNXXXXXXXXXX 277
           Y LPY TF                         G    SE+    ++T            
Sbjct: 216 YFLPYDTFEAIQQETMMAISESSTISSDTDIREGAAAISEIGECSQETEG-----HKKAT 270

Query: 278 XXXXYSGCGAMSTGLCLGANLSGSNLVTRWAVDLSEYACASLKLNHPETQI 328
               YSGCGAMSTGLC+GA LSG NLVT+WAVD++ +AC SL+ NHPET +
Sbjct: 271 LLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPETNV 321


>AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 |
           chr1:30342394-30346831 FORWARD LENGTH=791
          Length = 791

 Score =  187 bits (476), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 157/283 (55%), Gaps = 31/283 (10%)

Query: 57  SNTRFVGDPVPAEEARQHWPHRYQEKKQSARS----------KSSSDDDILQARRHYREA 106
           S+  F G P+   E+   WPHRYQ KK   ++          K   ++ I QA+ H+ +A
Sbjct: 15  SDLCFAGKPMSVVESTIRWPHRYQSKKTKLQAPTKKPANKGGKKEDEEIIKQAKCHFDKA 74

Query: 107 EVDGSTLYKLYDDAHVKAEEGDDNYICKIVEMFEACDGTLHFTAQWYYRAKDTVIKNLAF 166
            VDG  L  L DD +V    G   +I K++E+FEA DG  +   +WYYR +DT+I+  + 
Sbjct: 75  LVDG-VLINLNDDVYVTGLPGKLKFIAKVIELFEADDGVPYCRFRWYYRPEDTLIERFSH 133

Query: 167 LIEEPRRIFYSEVKDDNPLDCLLEKLNIARVTL-NVDLAEKEKTIPLCDYYCDTQYILPY 225
           L+ +P+R+F S  ++DNPL C+  K+NIA+V L  +    +++ IP CDYY D +Y +PY
Sbjct: 134 LV-QPKRVFLSNDENDNPLTCIWSKVNIAKVPLPKITSRIEQRVIPPCDYYYDMKYEVPY 192

Query: 226 STFVKFPPXXXXXXXXXXXXXXXXXNVTGKSEVDSQHKDTSNXXXXXXXXXXXXXXYSGC 285
             F                      + +  +  ++ HKD                 YSGC
Sbjct: 193 LNFTS--------ADDGSDASSSLSSDSALNCFENLHKDEK----------FLLDLYSGC 234

Query: 286 GAMSTGLCLGANLSGSNLVTRWAVDLSEYACASLKLNHPETQI 328
           GAMSTG C+GA++SG  L+T+W+VD++++AC SLKLNHPET++
Sbjct: 235 GAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEV 277


>AT4G19020.1 | Symbols: CMT2 | chromomethylase 2 |
           chr4:10414526-10420936 FORWARD LENGTH=1295
          Length = 1295

 Score =  177 bits (450), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 158/286 (55%), Gaps = 21/286 (7%)

Query: 48  AAVVNDSEGSNTRFVGDPVPAEEARQHWPHRYQ--EKKQSARSKSSSDDD---ILQARRH 102
            AV   ++ S   F+G+P+  EEA++ W  RY+  E+K  +R + S DD+   +     H
Sbjct: 510 TAVQEQNKRSICFFIGEPLSCEEAQERWRWRYELKERKSKSRGQQSEDDEDKIVANVECH 569

Query: 103 YREAEVDGSTLYKLYDDAHVKAEEGDDNYICKIVEMFEACDGTLHFTAQWYYRAKDTVIK 162
           Y +A+VDG T + L D A++K EE ++ ++ +IVE F+  DG  +F  QW+YRA DT+++
Sbjct: 570 YSQAKVDGHT-FSLGDFAYIKGEE-EETHVGQIVEFFKTTDGESYFRVQWFYRATDTIME 627

Query: 163 NLAFLIEEPRRIFYSEVKDDNPLDCLLEKLNIARVTLNVDLAEKEKTIPLCDYYCDTQYI 222
             A    + RR+FYS V +DNP+DCL+ K+ + +V+  V L  K  +I   DYY D +Y 
Sbjct: 628 RQA-TNHDKRRLFYSTVMNDNPVDCLISKVTVLQVSPRVGL--KPNSIK-SDYYFDMEYC 683

Query: 223 LPYSTFVKFPPXXXXXXXXXXXXXXXXXNVTGKSEVDSQHKDTSNXXXXXXXXXXXXXXY 282
           + YSTF                      +V      +S  K  S               Y
Sbjct: 684 VEYSTFQTL-----RNPKTSENKLECCADVVPTESTESILKKKS-----FSGELPVLDLY 733

Query: 283 SGCGAMSTGLCLGANLSGSNLVTRWAVDLSEYACASLKLNHPETQI 328
           SGCG MSTGL LGA +SG ++VT+WAVD +  AC SLKLNHP TQ+
Sbjct: 734 SGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQV 779