Miyakogusa Predicted Gene

Lj0g3v0308509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308509.1 Non Chatacterized Hit- tr|H3DF65|H3DF65_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,52.56,4e-19,P-loop containing nucleoside triphosphate
hydrolases,NULL; no description,NULL; SUBFAMILY NOT
NAMED,,CUFF.20841.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35970.1 | Symbols:  | P-loop containing nucleoside triphosph...   169   3e-43
AT2G03270.1 | Symbols:  | DNA-binding protein, putative | chr2:9...    91   2e-19
AT4G15570.1 | Symbols: MAA3 | P-loop containing nucleoside triph...    73   4e-14
AT5G47010.1 | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putati...    70   4e-13
AT1G65810.2 | Symbols:  | P-loop containing nucleoside triphosph...    65   1e-11
AT1G65810.1 | Symbols:  | P-loop containing nucleoside triphosph...    65   1e-11
AT1G65780.1 | Symbols:  | P-loop containing nucleoside triphosph...    65   1e-11
AT5G37030.1 | Symbols:  | P-loop containing nucleoside triphosph...    64   2e-11
AT5G37150.1 | Symbols:  | P-loop containing nucleoside triphosph...    64   3e-11
AT2G19120.1 | Symbols:  | P-loop containing nucleoside triphosph...    63   4e-11
AT5G37140.1 | Symbols:  | P-loop containing nucleoside triphosph...    63   5e-11
AT5G37160.1 | Symbols:  | P-loop containing nucleoside triphosph...    61   1e-10
AT5G52090.1 | Symbols:  | P-loop containing nucleoside triphosph...    61   2e-10
AT4G30100.1 | Symbols:  | P-loop containing nucleoside triphosph...    61   2e-10
AT4G05540.1 | Symbols:  | P-loop containing nucleoside triphosph...    60   2e-10
AT1G08840.2 | Symbols: emb2411 | DNA replication helicase, putat...    60   4e-10
AT1G08840.1 | Symbols: emb2411 | DNA replication helicase, putat...    60   4e-10
AT1G16800.1 | Symbols:  | P-loop containing nucleoside triphosph...    56   4e-09
AT2G38770.1 | Symbols: EMB2765 | P-loop containing nucleoside tr...    51   1e-07
AT1G05460.1 | Symbols: SDE3 | P-loop containing nucleoside triph...    50   3e-07

>AT5G35970.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:14119060-14123078
           REVERSE LENGTH=961
          Length = 961

 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 99/109 (90%)

Query: 2   LDEFPEAAGTEVSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLA 61
           LD+FP A G EV+TIDSFQGREAD VI+SMVRSN LGAVGFLGDSRR+NVA+TRARKH+A
Sbjct: 852 LDDFPVADGVEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRARKHVA 911

Query: 62  VVCDSSTICHNTFLARLMRHIRRFGRIKHVEPGNFGGYGLGMNPILPSI 110
           VVCDSSTICHNTFLARL+RHIR FGR+KH +PG+ GG GLG++P+LP +
Sbjct: 912 VVCDSSTICHNTFLARLLRHIRYFGRVKHADPGSLGGSGLGLDPMLPYL 960


>AT2G03270.1 | Symbols:  | DNA-binding protein, putative |
           chr2:994071-995990 FORWARD LENGTH=639
          Length = 639

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 54/75 (72%)

Query: 12  EVSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICH 71
           E+ST+D FQGRE + +I+SMVRSN+   VGFL D RR+NVAVTR+R+   +VCD+ T+  
Sbjct: 555 EISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTETVSS 614

Query: 72  NTFLARLMRHIRRFG 86
           + FL R++ +    G
Sbjct: 615 DAFLKRMIEYFEEHG 629


>AT4G15570.1 | Symbols: MAA3 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr4:8893043-8898858 FORWARD LENGTH=818
          Length = 818

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 3   DEFPEAAGTE------VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRA 56
           D F E  GTE      ++T+D FQGRE DV I S VR+N  G +GFL +SRR+NV +TRA
Sbjct: 662 DRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRA 721

Query: 57  RKHLAVVCDSSTICHNTFLARLMRHIRRFGRI 88
           +  + VV  ++T+  +     L+    +  R+
Sbjct: 722 KSSVLVVGSAATLKSDPLWKNLIESAEQRNRL 753


>AT5G47010.1 | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative
           | chr5:19072009-19078856 FORWARD LENGTH=1254
          Length = 1254

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 46/72 (63%)

Query: 12  EVSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICH 71
           EV+++DSFQGRE D +ILS VRSN    +GFL D RR+NVA+TRAR  + ++ +   +  
Sbjct: 842 EVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK 901

Query: 72  NTFLARLMRHIR 83
                 L+ H +
Sbjct: 902 QPLWNGLLTHYK 913


>AT1G65810.2 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:24477043-24480728
           REVERSE LENGTH=1016
          Length = 1016

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 13  VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICHN 72
           V ++D FQG E D++I+S VRSN  GA+GFL + +R NVA+TRAR  L ++ + +T+ +N
Sbjct: 747 VRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNVALTRARYCLWILGNEATLTNN 806

Query: 73  TFLAR 77
             + R
Sbjct: 807 RSVWR 811


>AT1G65810.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:24477043-24480728
           REVERSE LENGTH=1050
          Length = 1050

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 13  VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICHN 72
           V ++D FQG E D++I+S VRSN  GA+GFL + +R NVA+TRAR  L ++ + +T+ +N
Sbjct: 747 VRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNVALTRARYCLWILGNEATLTNN 806

Query: 73  TFLAR 77
             + R
Sbjct: 807 RSVWR 811


>AT1G65780.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:24462958-24466888
           REVERSE LENGTH=1065
          Length = 1065

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 13  VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICHN 72
           + T+D FQG E D++I+S VRSN +G VGFLG+ RR NV +TRAR  L ++ + +T+ ++
Sbjct: 762 IRTVDGFQGGEEDIIIVSTVRSNGVGRVGFLGNRRRTNVLLTRARFCLWILGNEATLMNS 821

Query: 73  TFLAR 77
             + R
Sbjct: 822 KSVWR 826


>AT5G37030.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:14634614-14636939
           REVERSE LENGTH=638
          Length = 638

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 13  VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTICHN 72
           V ++D FQG E D++I+S VRSN+ G VGFL + +R NVA+TRAR  L V+ + ST+  +
Sbjct: 544 VRSVDGFQGGEEDIIIISTVRSNSNGKVGFLSNRQRANVALTRARHCLWVIGNESTLARS 603

Query: 73  -TFLARLMRHIRR 84
            +  A L+   +R
Sbjct: 604 GSIWANLISDSKR 616


>AT5G37150.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:14701330-14704562
           FORWARD LENGTH=839
          Length = 839

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 3   DEFPEAAGTE----VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARK 58
           D++   +G +    V ++D FQG E D++I+S VRSN+ G VGFL + +R NVA+TRAR 
Sbjct: 709 DKYSSLSGQQFALNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLNNRQRANVALTRARH 768

Query: 59  HLAVVCDSSTI 69
            L V+ + +T+
Sbjct: 769 CLWVIGNETTL 779


>AT2G19120.1 | Symbols:  | P-loop containing nucleoside triphosphate
            hydrolases superfamily protein | chr2:8287036-8291802
            REVERSE LENGTH=1090
          Length = 1090

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 7/86 (8%)

Query: 4    EFPEAAGTE------VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRAR 57
            EF  A G +      ++T+D+FQG+E DV+I+S VR++  G VGF+ D RR+NVA+TRAR
Sbjct: 954  EFGNALGQDELKEIYINTVDAFQGQERDVIIMSCVRASGHG-VGFVSDIRRMNVALTRAR 1012

Query: 58   KHLAVVCDSSTICHNTFLARLMRHIR 83
            + L V+ ++S +  +   A L+   R
Sbjct: 1013 RALWVMGNASALMKSEDWAALISDAR 1038


>AT5G37140.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:14690436-14692851
           FORWARD LENGTH=692
          Length = 692

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 13  VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTIC-H 71
           V ++D FQG E D++I+S VRSN  G VGFL + +R NVA+TRAR  L V+ + +T+   
Sbjct: 576 VRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCLWVIGNETTLALS 635

Query: 72  NTFLARLMRHIRRFG 86
            +  A+L+   R  G
Sbjct: 636 GSSWAKLISESRTLG 650


>AT5G37160.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:14705426-14708376
           FORWARD LENGTH=871
          Length = 871

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 13  VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTI 69
           V ++D FQG E DV+I+S VR N  G VGFL + +R NVA+TRAR  L V+ + +T+
Sbjct: 757 VQSVDGFQGGEVDVIIISTVRCNVNGNVGFLSNRQRANVALTRARHCLWVIGNGTTL 813


>AT5G52090.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr5:21167432-21169462
           REVERSE LENGTH=676
          Length = 676

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 3   DEFPEAAGTE----VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARK 58
           D++   +G +    V ++D FQG E D++I+S VRSN  G VGFL + +R NVA+TRAR 
Sbjct: 546 DKYSSLSGQQFTLNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARH 605

Query: 59  HLAVVCDSSTI 69
            L V+ + +T+
Sbjct: 606 CLWVIGNETTL 616


>AT4G30100.1 | Symbols:  | P-loop containing nucleoside triphosphate
            hydrolases superfamily protein | chr4:14714191-14719335
            FORWARD LENGTH=1311
          Length = 1311

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 13   VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTI 69
            ++T+D+FQG+E DV+I+S VR++  G VGF+ D RR+NVA+TRA++ L V+ ++S +
Sbjct: 1132 INTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRAKRALWVMGNASAL 1187


>AT4G05540.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:2818776-2821065
           REVERSE LENGTH=689
          Length = 689

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 13  VSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSSTI 69
           V ++D FQG E D++I+S VRSN  G +GFL + +R NVA+TRAR  L V+ +  T+
Sbjct: 627 VRSVDGFQGGEEDIIIISTVRSNCNGNIGFLSNRQRANVALTRARHCLWVIGNERTL 683


>AT1G08840.2 | Symbols: emb2411 | DNA replication helicase, putative |
            chr1:2829579-2838369 REVERSE LENGTH=1315
          Length = 1315

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 12   EVSTIDSFQGREADVVILSMVRSNTL---GAVGFLGDSRRINVAVTRARKHLAVVCDSST 68
            E+ TID +QGR+ D +++S VRS       A   LGD  RINVA+TRA+K L +V    T
Sbjct: 1226 EIHTIDKYQGRDKDCILVSFVRSREKPRSSASSLLGDWHRINVALTRAKKKLIMVGSQRT 1285

Query: 69   ICHNTFLARLMRHIRRFGRIKHVEPGNF 96
            +     L  L+  ++    I ++ PG+ 
Sbjct: 1286 LSRVPLLMLLLNKVKEQSGILNLLPGDL 1313


>AT1G08840.1 | Symbols: emb2411 | DNA replication helicase, putative |
            chr1:2829579-2838369 REVERSE LENGTH=1296
          Length = 1296

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 12   EVSTIDSFQGREADVVILSMVRSNTL---GAVGFLGDSRRINVAVTRARKHLAVVCDSST 68
            E+ TID +QGR+ D +++S VRS       A   LGD  RINVA+TRA+K L +V    T
Sbjct: 1207 EIHTIDKYQGRDKDCILVSFVRSREKPRSSASSLLGDWHRINVALTRAKKKLIMVGSQRT 1266

Query: 69   ICHNTFLARLMRHIRRFGRIKHVEPGNF 96
            +     L  L+  ++    I ++ PG+ 
Sbjct: 1267 LSRVPLLMLLLNKVKEQSGILNLLPGDL 1294


>AT1G16800.1 | Symbols:  | P-loop containing nucleoside triphosphate
            hydrolases superfamily protein | chr1:5745523-5755263
            REVERSE LENGTH=2127
          Length = 2127

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 7/68 (10%)

Query: 9    AGTEVSTIDSFQGREADVVILSMVRSN-------TLGAVGFLGDSRRINVAVTRARKHLA 61
            A  E++T+D FQG+E D+++LS VR+            +GF+ D RR+NVA+TRA+  L 
Sbjct: 1808 ADMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLW 1867

Query: 62   VVCDSSTI 69
            V+ ++ T+
Sbjct: 1868 VLGNTRTL 1875


>AT2G38770.1 | Symbols: EMB2765 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:16203185-16210253 REVERSE LENGTH=1509
          Length = 1509

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 11   TEVSTIDSFQGREADVVILSMVRSNTLGAVGFLGDSRRINVAVTRARKHLAVVCDSS 67
            ++V+T+D FQG++ D ++LS+VR+     VG L D RR+ VA++RAR  L V C  S
Sbjct: 1316 SKVTTVDKFQGQQNDFILLSLVRTRF---VGHLRDVRRLVVAMSRARLGLYVFCRRS 1369


>AT1G05460.1 | Symbols: SDE3 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr1:1601357-1604658 REVERSE LENGTH=1002
          Length = 1002

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 12  EVSTIDSFQGREADVVILSMVRS-------NTLGAVGFLGDSRRINVAVTRARKHLAVVC 64
           +V +++ FQG+E  V+I+S VRS       +    +GFL + RR NVA+TRA   L ++ 
Sbjct: 735 KVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIG 794

Query: 65  DSSTICHNTFLARLM 79
           +   IC +    +L+
Sbjct: 795 NPHIICKDMNWNKLL 809