Miyakogusa Predicted Gene

Lj0g3v0308169.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308169.2 Non Chatacterized Hit- tr|I1NB46|I1NB46_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,34.36,2e-18,DUF3493,Protein of unknown function DUF3493;
seg,NULL,CUFF.20797.2
         (334 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28740.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   368   e-102
AT1G02910.1 | Symbols: LPA1 | tetratricopeptide repeat (TPR)-con...   112   3e-25

>AT4G28740.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 21 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF3493
           (InterPro:IPR021883); BEST Arabidopsis thaliana protein
           match is: tetratricopeptide repeat (TPR)-containing
           protein (TAIR:AT1G02910.1); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:14201051-14202542 FORWARD LENGTH=347
          Length = 347

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/251 (71%), Positives = 210/251 (83%), Gaps = 8/251 (3%)

Query: 89  EVLSPFRSLRMFFYVAFIASASLGAFIAATQLIGALANSSRASQVPEILKGLGIDIGAVS 148
           EVLSPFRS+RMFFY+AFIAS SLG  IA ++LIGALAN +R+ +V EI+KGLG+DIGA S
Sbjct: 100 EVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAAS 159

Query: 149 IFAFLYFRDNKAKNAQEARLSREEFLSNLKLRVDEK-KIIPVSSLRGIARLVICAGPESF 207
           +FAFLYF +NK KNAQ ARLSREE L  LK+RV+E  K+I V  LRG+ARLVICAGP  F
Sbjct: 160 LFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEF 219

Query: 208 ITESFKRSEPFTEGLMDRGVLVVPFVTDGNSPDLEFEET----EEMKQLATRRKRLWQLT 263
           I E+FKRS+ +T+GL++RGV+VV + TDGNSP LEF+ET    EEM Q   RRK+LW++T
Sbjct: 220 IEEAFKRSKEYTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQ---RRKKLWRVT 276

Query: 264 PVYITEWSNWLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMW 323
           PV++ EW  WL+EQKKLA VSS+SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKGMW
Sbjct: 277 PVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMW 336

Query: 324 TGLLDGFDGRV 334
           TGLLDG DGRV
Sbjct: 337 TGLLDGMDGRV 347


>AT1G02910.1 | Symbols: LPA1 | tetratricopeptide repeat
           (TPR)-containing protein | chr1:655749-658125 REVERSE
           LENGTH=453
          Length = 453

 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 23/261 (8%)

Query: 89  EVLSPFRSLRMFFYVAFIASASLGAFIAATQLIGALANSSRASQVPEILKGLGIDIGAVS 148
           EV +PFR +R FFY AF A+A +  F    +L+ A+     A  + E      I+IG + 
Sbjct: 191 EVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIV 250

Query: 149 IFAFLYFRDNKAKNAQEARLSREEFLSNLKLRVDEKKIIPVSSLRGIARLVICAGPESFI 208
           +   L+  +NK +  Q  +++R+E LS L LR+   +++ +  LR   R VI AG +  +
Sbjct: 251 VMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETV 310

Query: 209 TESFKRSEPFTEGLMDRGVLVVPFV-TDGNSPDLEF-----------------EETEEMK 250
           T + ++++ F   L+ RGVL+VP V  +  +P++E                  E+ +   
Sbjct: 311 TLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRA 370

Query: 251 QLATRRKRL-----WQLTPVYITEWSNWLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVG 305
           Q    + +L     ++   V   EW  W+ +Q+   GV+    VY+ LRLDGRVR SG G
Sbjct: 371 QSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRG 430

Query: 306 YPPWNAFVAQLPPVKGMWTGL 326
            P W     +LPP+  + + L
Sbjct: 431 MPDWAEISKELPPMDDVLSKL 451