Miyakogusa Predicted Gene

Lj0g3v0308169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308169.1 tr|A9S8E7|A9S8E7_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,66.67,4e-19,seg,NULL,CUFF.20797.1
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28740.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   123   4e-29
AT1G02910.1 | Symbols: LPA1 | tetratricopeptide repeat (TPR)-con...    49   9e-07

>AT4G28740.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 21 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF3493
           (InterPro:IPR021883); BEST Arabidopsis thaliana protein
           match is: tetratricopeptide repeat (TPR)-containing
           protein (TAIR:AT1G02910.1); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:14201051-14202542 FORWARD LENGTH=347
          Length = 347

 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 58/62 (93%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDG 141
           WL+EQKKLA VSS+SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKGMWTGLLDG DG
Sbjct: 286 WLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDG 345

Query: 142 RV 143
           RV
Sbjct: 346 RV 347


>AT1G02910.1 | Symbols: LPA1 | tetratricopeptide repeat
           (TPR)-containing protein | chr1:655749-658125 REVERSE
           LENGTH=453
          Length = 453

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGL 135
           W+ +Q+   GV+    VY+ LRLDGRVR SG G P W     +LPP+  + + L
Sbjct: 398 WIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKL 451