Miyakogusa Predicted Gene

Lj0g3v0308159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308159.1 tr|A9SPD7|A9SPD7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_133111,75.86,1e-17,PSI_PsaE,Photosystem I PsaE, reaction
centre subunit IV; no description,NULL;
PSAE_SPIOL_P12354;,Pho,CUFF.20854.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2...   102   4e-23
AT4G28750.1 | Symbols: PSAE-1 | Photosystem I reaction centre su...   101   1e-22

>AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 |
           chr2:8736780-8737644 FORWARD LENGTH=145
          Length = 145

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/53 (92%), Positives = 50/53 (94%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RGSKVKILRKESYWYK  GSVVAVDQDPKTRYPVVVRF KVNYAN+STNNYAL
Sbjct: 86  RGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYAL 138


>AT4G28750.1 | Symbols: PSAE-1 | Photosystem I reaction centre
           subunit IV / PsaE protein | chr4:14202951-14203888
           REVERSE LENGTH=143
          Length = 143

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 50/53 (94%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RGSKVKILR+ESYW+K  GSVVAVDQDPKTRYPVVVRF KVNYAN+STNNYAL
Sbjct: 83  RGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYAL 135