Miyakogusa Predicted Gene

Lj0g3v0307769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307769.1 Non Chatacterized Hit- tr|I3SWY0|I3SWY0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.79,0,WD40
repeat-like,WD40-repeat-containing domain; seg,NULL; SUBFAMILY NOT
NAMED,NULL; NUCLEASE-RELATED,CUFF.20768.1
         (218 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73180.1 | Symbols:  | Eukaryotic translation initiation fact...   281   3e-76
AT1G73180.2 | Symbols:  | Eukaryotic translation initiation fact...   274   4e-74
AT5G27640.2 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3...    67   1e-11
AT5G27640.1 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3...    67   1e-11
AT5G25780.1 | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic tr...    63   2e-10

>AT1G73180.1 | Symbols:  | Eukaryotic translation initiation factor
           eIF2A family protein | chr1:27518335-27521432 FORWARD
           LENGTH=513
          Length = 513

 Score =  281 bits (718), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 157/196 (80%), Gaps = 4/196 (2%)

Query: 1   MPAKATLFDKNCNPLLELGTGPYNTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAA 60
           MPA  T+FDKNC PL+ELG GPYNT+RWNPKGR LC+AGFGNLPGDM FWD  +KKQL +
Sbjct: 294 MPACVTIFDKNCKPLMELGEGPYNTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGS 353

Query: 61  TKVEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPES 120
            K EWSVTSEWSPDG YF+TA+TAPR Q+DNG+KIF+Y+G  Y+KKMF++L+QA+WKPES
Sbjct: 354 NKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMKIFNYDGKRYYKKMFERLYQAEWKPES 413

Query: 121 PSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQASTKASSANPPAQKPAAYCPPLAKTAA 180
           P +FGDI+ELIKS++S+KL + K  GQG     A  K  + NP AQKPAAY PP AK AA
Sbjct: 414 PERFGDISELIKSVESLKLGEGKSQGQG----SAQKKTIAPNPIAQKPAAYRPPHAKHAA 469

Query: 181 VIQAQLLGESPSETLS 196
            +QA+LLG S +  +S
Sbjct: 470 AVQAELLGISTTGEMS 485


>AT1G73180.2 | Symbols:  | Eukaryotic translation initiation factor
           eIF2A family protein | chr1:27518335-27521014 FORWARD
           LENGTH=484
          Length = 484

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 151/186 (81%), Gaps = 4/186 (2%)

Query: 1   MPAKATLFDKNCNPLLELGTGPYNTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAA 60
           MPA  T+FDKNC PL+ELG GPYNT+RWNPKGR LC+AGFGNLPGDM FWD  +KKQL +
Sbjct: 294 MPACVTIFDKNCKPLMELGEGPYNTLRWNPKGRVLCVAGFGNLPGDMAFWDVVNKKQLGS 353

Query: 61  TKVEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPES 120
            K EWSVTSEWSPDG YF+TA+TAPR Q+DNG+KIF+Y+G  Y+KKMF++L+QA+WKPES
Sbjct: 354 NKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMKIFNYDGKRYYKKMFERLYQAEWKPES 413

Query: 121 PSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQASTKASSANPPAQKPAAYCPPLAKTAA 180
           P +FGDI+ELIKS++S+KL + K  GQG     A  K  + NP AQKPAAY PP AK AA
Sbjct: 414 PERFGDISELIKSVESLKLGEGKSQGQG----SAQKKTIAPNPIAQKPAAYRPPHAKHAA 469

Query: 181 VIQAQL 186
            +QA++
Sbjct: 470 AVQAEV 475


>AT5G27640.2 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1
           | translation initiation factor 3B1 |
           chr5:9781207-9784759 REVERSE LENGTH=738
          Length = 738

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 24  NTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAATKVEWSVTSEWSPDGCYFMTATT 83
           N + W+P G+++ LAG     G + F++  + + +A  +   +   EW P G Y  TA T
Sbjct: 539 NALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATAVT 598

Query: 84  APRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPESPS 122
           +   +++NG  I+ +NG + ++ + D  FQ  W+P  PS
Sbjct: 599 SVH-EMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPS 636


>AT5G27640.1 | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1
           | translation initiation factor 3B1 |
           chr5:9781207-9784759 REVERSE LENGTH=712
          Length = 712

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 24  NTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAATKVEWSVTSEWSPDGCYFMTATT 83
           N + W+P G+++ LAG     G + F++  + + +A  +   +   EW P G Y  TA T
Sbjct: 513 NALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATAVT 572

Query: 84  APRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPESPS 122
           +   +++NG  I+ +NG + ++ + D  FQ  W+P  PS
Sbjct: 573 SVH-EMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPS 610


>AT5G25780.1 | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic
           translation initiation factor 3B-2 |
           chr5:8973420-8976758 REVERSE LENGTH=714
          Length = 714

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 2/101 (1%)

Query: 24  NTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAATKVEWSVTSEWSPDGCYFMTATT 83
           N + W+P G+++ LAG     G + F++  + + +A  +   +   EW P G Y  T+ T
Sbjct: 514 NALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATSVT 573

Query: 84  APRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPESPSKF 124
               +++NG  I+ +NG++ ++ + D  FQ  W+P  P+ F
Sbjct: 574 TVH-EMENGFTIWSFNGNMVYRILKDHFFQLAWRPR-PASF 612