Miyakogusa Predicted Gene

Lj0g3v0307699.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307699.1 tr|Q70KT0|Q70KT0_ORYSJ NF protein (Fragment)
OS=Oryza sativa subsp. japonica PE=2 SV=1,42,5e-16,SUBFAMILY NOT
NAMED,NULL; AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY
SUBUNIT,NULL; no descriptio,CUFF.20757.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose n...   233   7e-62

>AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose
           nonfermenting 4 | chr1:2900149-2904212 REVERSE
           LENGTH=487
          Length = 487

 Score =  233 bits (594), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 120/214 (56%), Positives = 152/214 (71%), Gaps = 6/214 (2%)

Query: 1   MSRMDSYPDVFEVLCSLIPGYHQYNFYVDGKWRHDEQQPFVNEIFGVVNSIYLLRQPDIL 60
           MS ++  P VF+V+C+L PGYHQY F+VDG+WRHDE QPFV+   GVVN+I++   PD++
Sbjct: 49  MSPLEGCPTVFQVICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFI-TGPDMV 107

Query: 61  STLLSAETPGGGHMEVDN----SASGPVEANPMMSESDLLISRHRISTFLSRSTAYDLLP 116
               S ET G  +M+VD+    +A    EA P MS  DL +SRHRIS  LS  TAY+LLP
Sbjct: 108 PAGFSPETLGRSNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLP 167

Query: 117 ESGKVIALDINLSVKQALSILHEEGIYLAPICDSSTCQFVGVLNAMDFIQILKELGNHGT 176
           ESGKVIALD+NL VKQA  IL+E+GI LAP+ D    QFVGVL  +DFI IL+ELG HG+
Sbjct: 168 ESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGS 227

Query: 177 DLTEEQLETYTIADWREGKLLQCETNCNGRARPW 210
           +LTEE+LET+TIA W+EGK        +G  RP+
Sbjct: 228 NLTEEELETHTIAAWKEGK-AHISRQYDGSGRPY 260